biblio

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Journal Article
S. Bagmare, Puranik, V. G., Fernandes, M., and Kumar, V. A., 4 `-Epi-DNA: A DNA Mimic Containing 4 `-hydroxymethyl-alpha-l-Xylo-thymidine with compact backbone like RNA, Nucleosides Nucleotides & Nucleic Acids, vol. 35, no. 9, pp. 445-458, 2016.
S. S. Gokhale and Kumar, V. A., Amino/guanidino-functionalized N-(pyrrolidin-2-ethyl)glycine-based pet-PNA: design, synthesis and binding with DNA/RNA, Organic & Biomolecular Chemistry, vol. 8, no. 16, pp. 3742-3750, 2010.
T. Bose, Banerjee, A., Nahar, S., Maiti, S., and Kumar, V. A., Beta, gamma-Bis-substituted PNA with configurational and conformational switch: preferred binding to cDNA/RNA and cell-uptake studies, Chemical Communications, vol. 51, no. 36, pp. 7693-7696, 2015.
A. Banerjee and Kumar, V. A., C-3 `-endo-puckered pyrrolidine containing PNA has favorable geometry for RNA binding: novel ethano locked PNA (ethano-PNA), Bioorganic & Medicinal Chemistry, vol. 21, no. 14, pp. 4092-4101, 2013.
V. A. Kumar, CARB 36-Novel and structurally biased backbone modifications of nucleic acids, Abstracts of Papers of the American Chemical Society, vol. 238, p. Meeting Abstract : 36-CARB, 2009.
K. Gogoi and Kumar, V. A., Chimeric (alpha-amino acid plus nucleoside-beta-amino acid)(n) peptide oligomers show sequence specific DNA/RNA recognition, Chemical Communications, no. 6, pp. 706-708, 2008.
T. Bose and Kumar, V. A., Critical role of select peptides in the loop region of G-rich PNA in the preferred G-quadruplex topology and stability, Tetrahedron, vol. 73, no. 12, pp. 1534-1540, 2017.
V. Madhuri and Kumar, V. A., Design and synthesis of dephosphono dna analogues containing 1,2,3-triazole linker and their UV-melting studies with DNA/RNA, Nucleosides Nucleotides & Nucleic Acids, vol. 31, no. 1-3, pp. 97-111, 2012.
V. Madhuri and Kumar, V. A., Design, synthesis and DNA/RNA binding studies of nucleic acids comprising stereoregular and acyclic polycarbamate backbone: polycarbamate nucleic acids (PCNA), Organic & Biomolecular Chemistry, vol. 8, no. 16, pp. 3734-3741, 2010.
K. Soni, Gupta, S., Gokhale, S. S., Dey, R., Gunjal, A. D., Kumar, V. A., and Pillai, B., Detection and knockdown of MicroRNA-34a using thioacetamido nucleic acid, Nucleic Acid Therapeutics, vol. 23, no. 3, pp. 195-202, 2013.
S. Bagmare, D'Costa, M., and Kumar, V. A., Effect of chirality of L/D-proline and prochiral glycine as the linker amino acid in five-atom linked thymidinyl-(alpha-aminoacid)-thymidine dimers, Chemical Communications, no. 43, pp. 6646-6648, 2009.
H. Kaur, Arora, A., Gogoi, K., Solanke, P., Gunjal, A. D., Kumar, V. A., and Maiti, S., Effects for the incorporation of five-atom thioacetamido nucleic acid (TANA) backbone on hybridization thermodynamics and kinetics of DNA duplexes, Journal of Physical Chemistry B, vol. 113, no. 9, pp. 2944-2951, 2009.
M. Vij, Natarajan, P., Yadav, A. K., Patil, K. M., Pandey, T., Gupta, N., Santhiya, D., Kumar, V. A., Fernandes, M., and Ganguli, M., Efficient cellular entry of (r-x-r)-type carbamate-plasmid DNA complexes and its implication for noninvasive topical DNA delivery to skin, Molecular Pharmaceutics, vol. 13, no. 6, pp. 1779-1790, 2016.
M. Varada, Erande, N. D., and Kumar, V. A., Ene-nucleic acids: a different paradigm to DNA chemistry, RSC Advances, vol. 5, no. 118, pp. 97824-97830, 2015.
V. A. Kumar, Evolution of specific 3 `-5 `-linkages in RNA in pre-biotic soup: a new hypothesis, Organic & Biomolecular Chemistry, vol. 14, no. 43, pp. 10123-10133, 2016.
R. Awachat, Wagh, A. A., Aher, M., Fernandes, M., and Kumar, V. A., Favorable 2 '-substitution in the loop region of a thrombin-binding DNA aptamer, Bioorganic & Medicinal Chemistry Letters, vol. 28, no. 10, pp. 1765-1768, 2018.
A. N. Patwa, Gonnade, R. G., Kumar, V. A., Bhadbhade, M. M., and Ganesh, K. N., Ferrocene-Bis(thymine/uracil) conjugates: base pairing directed, spacer dependent self-assembly and supramolecular packing, Journal of Organic Chemistry, vol. 75, no. 24, pp. 8705-8708, 2010.
A. N. Patwa, Gupta, S., Gonnade, R. G., Kumar, V. A., Bhadbhade, M. M., and Ganesh, K. N., Ferrocene-linked thymine/uracil conjugates: base pairing directed self-assembly and supramolecular packing, Journal of Organic Chemistry, vol. 73, no. 4, pp. 1508-1515, 2008.
A. D. Gunjal, Fernandes, M., Erande, N. D., Rajamohanan, P. R., and Kumar, V. A., Functional isoDNA aptamers: modified thrombin binding aptamers with a 2'-5'-linked sugarphosphate backbone (isoTBA), Chemical Communications, vol. 50, no. 5, pp. 605-607, 2014.
A. Banerjee, Bagmare, S., Varada, M., and Kumar, V. A., Glycine-linked nucleoside-beta-amino acids: polyamide analogues of nucleic acids, Bioconjugate Chemistry, vol. 26, no. 8, pp. 1737-1742, 2015.
K. M. Patil, Naik, R. J., Rajpal,, Fernandes, M., Ganguli, M., and Kumar, V. A., Highly efficient (R-X-R)-type carbamates as molecular transporters for cellular delivery, Journal of the American Chemical Society, vol. 134, no. 17, pp. 7196-7199, 2012.
M. N. Aher, Erande, N. D., Kumar, V. A., Fernandes, M., and Gonnade, R. G., Influence of fluorine substitution on the molecular conformation of 3 `-deoxy-3 `-fluoro-5-methyluriaine, Acta Crystallographica Section C-Structural Chemistry, vol. 76, p. 346+, 2020.
S. Nahar, Kotikam, V., Kumar, V. A., and Maiti, S., Inhibition of miR-21 by 3 `/5 `-serinyl-capped 2 `-O-Methyl RNA Interspersed with 2 `-O-(2-Amino-3-Methoxypropyl) uridine units, Nucleic Acid Therapeutics, vol. 26, no. 5, pp. 327-334, 2016.
S. Bagmare, Gunjal, A. D., and Kumar, V. A., Investigation of the effect of amino acid chirality in the internucleoside linker on DNA:DNA and DNA : RNA duplex stability, Tetrahedron, vol. 71, no. 16, pp. 2442-2449, 2015.
M. Varada, Aher, M., Erande, N., Kumar, V. A., and Fernandes, M., Methoxymethyl threofuranosyl thymidine (4 `-MOM-TNA-T) at the T7 position of the thrombin-binding aptamer boosts anticoagulation activity, thermal stability, and nuclease resistance, ACS Omega, vol. 5, no. 1, pp. 498-506, 2020.
V. A. Kumar, Modified nucleic acid substructures in medicinal chemistry and drug development, Current Topics in Medicinal Chemistry, vol. 7, no. 7, p. 639, 2007.
S. S. Gokhale, Gogoi, K., and Kumar, V. A., Probing binding preferences of DNA and RNA: backbone chirality of thioacetamido-linked nucleic acids and iso-thioacetamido-linked nucleic acids to differentiate DNA versus RNA selective binding, Journal of Organic Chemistry, vol. 75, no. 21, pp. 7431-7434, 2010.
N. D. Erande, Gunjal, A. D., Fernandes, M., and Kumar, V. A., Probing the furanose conformation in the 2 `-5 ` strand of isoDNA:RNA duplexes by freezing the nucleoside conformations, Chemical Communications, vol. 47, no. 13, pp. 4007-4009, 2011.
M. Varada, Kotikam, V., and Kumar, V. A., Robust synthesis of enantiopure cyclohexenyl analogues of 2/3-deoxyribose sugars as carbocyclic nucleoside precursors, Tetrahedron, vol. 67, no. 32, pp. 5744-5749, 2011.
P. Natarajan, Patil, K. M., Vij, M., Yadav, A. K., Kumar, V. A., Ganguli, M., and Fernandes, M., RXR-carbamate - a novel molecular transporter for skin, Molecular Therapy, vol. 23, pp. S64-S64, 2015.
K. M. Patil, Naik, R. J., Vij, M., Yadav, A. K., Kumar, V. A., Ganguli, M., and Fernandes, M., Second generation, arginine-rich (R-X `-R)(4)-type cell-penetrating alpha-omega-alpha-peptides with constrained, chiral omega-amino acids (X `) for enhanced cargo delivery into cells, Bioorganic & Medicinal Chemistry Letters, vol. 24, no. 17, pp. 4198-4202, 2014.
T. Bose and Kumar, V. A., Simple molecular engineering of glycol nucleic acid: progression from self-pairing to cross-pairing with cDNA and RNA, Bioorganic & Medicinal Chemistry, vol. 22, no. 21, pp. 6227-6232, 2014.
V. A. Kumar and Ganesh, K. N., Structure-editing of nucleic acids for selective targeting of RNA, Current Topics in Medicinal Chemistry, vol. 7, no. 7, pp. 715-726, 2007.
V. Kotikam and Kumar, V. A., Synthesis and properties of 2 `-O-[R- and S-(2-amino-3-methoxy)propyl] (R-AMP and S-AMP) nucleic acids, Tetrahedron, vol. 69, no. 31, pp. 6404-6408, 2013.
N. D. Erande, Gunjal, A. D., Fernandes, M., Gonnade, R. G., and Kumar, V. A., Synthesis and structural studies of S-type/N-type-locked/frozen nucleoside analogues and their incorporation in RNA-selective, nuclease resistant 2 `-5 ` linked oligonucleotides, Organic & Biomolecular Chemistry, vol. 11, no. 5, pp. 746-757, 2013.
S. Bagmare, Varada, M., Banerjee, A., and Kumar, V. A., Synthesis of all four nucleoside-based beta-amino acids as protected precursors for the synthesis of polyamide-DNA with alternating alpha-amino acid and nucleoside-beta-amino acids, Tetrahedron, vol. 69, no. 3, pp. 1210-1216, 2013.
M. N. Aher, Unimolecular antiparallel G-quadruplex folding topology of 2'-5'-isoTBA sequences remains unaltered by loop composition, Organic & Biomolecular Chemistry, vol. 13, no. 48, pp. 11696-11703, 2015.
K. Gogoi, Mane, M. V., Kunte, S. S., and Kumar, V. A., Versatile method for the preparation of conjugates of peptides with DNA/PNA/analog by employing chemo-selective click reaction in water, Nucleic Acids Research, vol. 35, no. 21, p. e139, 2007.