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Journal Article
A. Tanala Patra, Hingamire, T., Belekar, M. A., Xiong, A., Subramanian, G., Bozdech, Z., Preiser, P., Shanmugam, D., and Chandramohanadas, R., “Whole-cell phenotypic screening of medicines for malaria venture pathogen box identifies specific inhibitors of plasmodium falciparum late-stage development and egress”, Antimicrobial Agents and Chemotherapy, vol. 64, no. 5, pp. e01802-19, 2020.
M. P. Magarinos, Carmona, S. J., Crowther, G. J., Ralph, S. A., Roos, D. S., Shanmugam, D., and Van Voorhis, W. C., “TDR Targets: a chemogenomics resource for neglected diseases”, Nucleic Acids Research, vol. 40, no. D1, pp. D1118-D1127, 2012.
L. Uran Landaburu, Berenstein, A. J., Videla, S., Maru, P., Shanmugam, D., Chernomoretz, A., and Aguero, F., “TDR Targets 6: driving drug discovery for human pathogens through intensive chemogenomic data integration”, Nucleic Acids Research, vol. 48, no. D1, pp. D992-D1005, 2020.
G. Subramanian, Belekar, M. A., Shukla, A., Tong, J. Xin, Sinha, A., Chu, T. T. T., Kulkarni, A. S., Preiser, P. R., D. Reddy, S., Tan, K. S. W., Shanmugam, D., and Chandramohanadas, R., “Targeted phenotypic screening in plasmodium falciparum and toxoplasma gondii reveals novel modes of action of medicines for malaria venture malaria box molecules (vol 3, e00534-17, 2018)”, MSphere, vol. 4, no. 2, pp. e00159-19, 2019.
G. Subramanian, “Targeted phenotypic screening in plasmodium falciparum and toxoplasma gondii reveals novel modes of action of medicines for malaria venture malaria box molecules”, mSphere, vol. 3, no. 1, pp. e00534-17, 2018.
D. Niveditha, Khan, S., Khilari, A., Nadkarni, S., Bhalerao, U., Kadam, P., Yadav, R., Kanekar, J. B., Shah, N., Likhitkar, B., Sawant, R., Thakur, S., Tupekar, M., Nagar, D., Rao, A. G., Jagtap, R., Jogi, S., Belekar, M., Pathak, M., Shah, P., Ranade, S., Phadke, N., Das, R., Joshi, S., Karyakarte, R., Ghose, A., Kadoo, N., Shashidhara, L. S., Monteiro, J. Merwin, Shanmugam, D., Raghunathan, A., and Karmodiya, K., “Tale of two waves: Delineating diverse genomic and transmission landscapes driving the COVID-19 pandemic in Pune, India”, Journal of Infection and Public Health, vol. 16, no. 8, pp. 1290-1300, 2023.
G. R. Jachak, Elizebath, D., Shukla, A., Shanmugam, D., and D. Reddy, S., “Synthesis and biological evaluation of hoshionolactam-based compounds”, European Journal of Organic Chemistry, vol. 2021, no. 15, pp. 2212-2218, 2021.
A. D. Bendre, Suresh, C. G., Shanmugam, D., and Ramasamy, S., “Structural insights into the unique inhibitory mechanism of Kunitz type trypsin inhibitor from Cicer arietinum L. Vol. 37”, Journal of Biomolecular Structure & Dynamics, vol. 37, no. 10, pp. 2669-2677, 2019.
P. Das, Babbar, P., Malhotra, N., Sharma, M., Jachak, G. R., Gonnade, R. G., Shanmugam, D., Harlos, K., Yogavel, M., Sharma, A., and D. Reddy, S., “Specific stereoisomeric conformations determine the drug potency of cladosporin scaffold against malarial parasite”, Journal of Medicinal Chemistry, vol. 61, no. 13, pp. 5664-5678, 2018.
J. Chhibber-Goel, Shukla, A., Shanmugam, D., and Sharma, A., “Profiling of metabolic alterations in mice infected with malaria parasites via high-resolution metabolomics”, Molecular and Biochemical Parasitology, vol. 252, p. 111525, 2022.
A. H. Chaurasiya, Khilari, A. A., Kazi, R., Jaiswal, M. R., Bhoite, G. M., Padwal, M. K., Momin, A. A., Shanmugam, D., and Kulkarni, M. J., “Nanopore sequencing of RAGE gene polymorphisms and their association with type 2 diabetes”, ACS Omega, vol. 8, no. 29, pp. 25727-25738, 2023.
A. A. Betgiri, Jadhav, S. N., Pawde, M., Shukla, A., Mote, C., Pawar, P. D., Shanmugam, D., and Kundu, K., “Mitochondrial cytochrome oxidase C subunit III (cox3) gene as a sensitive and specific target for molecular detection of Babesia gibsoni infection in dogs”, Experimental Parasitology, vol. 206, p. 107771, 2019.
A. A. Chinchansure, Arkile, M. A., Shukla, A., Shanmugam, D., Sarkar, D., and Joshi, S. P., “Leucas mollissima, a source of bioactive compounds with antimalarial and antimycobacterium activities”, Planta Medica Letter, vol. 2, no. 1, pp. e35-e38, 2015.
I. Q. H. Phan, Davies, D. R., Moretti, N. Silvio, Shanmugam, D., Cestari, I., Anupama, A., Fairman, J. W., Edwards, T. E., Stuart, K., Schenkman, S., and Myler, P. J., “Iron superoxide dismutases in eukaryotic pathogens: new insights from apicomplexa and trypanosoma structures”, Acta Crystallographica Section F-Structural Biology Communications, vol. 71, pp. 615-621, 2015.
K. B. Batkulwar, Bansode, S. B., Patil, G. V., Godbole, R. K., Kazi, R. S., Chinnathambi, S., Shanmugam, D., and Kulkarni, M. J., “Investigation of phosphoproteome in RAGE signaling”, Proteomics, vol. 15, no. 2-3, pp. 245-259, 2015.
S. M. Dar, Dholakia, B. B., Kulkarni, A. P., Oak, P. S., Shanmugam, D., Gupta, V. S., and Giri, A. P., “Influence of domestication on specialized metabolic pathways in fruit crops”, Planta, vol. 253, no. 2, p. 61, 2021.
C. L. Meena, Hingamire, T., Gupta, T., Deshmukh, B., Karmodiya, K., Joshi, R., Shanmugam, D., and Sanjayan, G. J., “Histidinal-based potent antimalarial agents”, ChemMedChem, vol. 18, no. 9, 2023.
R. Salunke, Mourier, T., Banerjee, M., Pain, A., and Shanmugam, D., “Highly diverged novel subunit composition of apicomplexan F-type ATP synthase identified from Toxoplasma gondii”, Plos Biology, vol. 16, no. 7, p. e2006128, 2018.
A. Shukla, Olszewski, K. L., Llinas, M., Rommereim, L. M., Fox, B. A., Bzik, D. J., Xia, D., Wastling, J., Beiting, D., Roos, D. S., and Shanmugam, D., “ Glycolysis is important for optimal asexual growth and formation of mature tissue cysts by Toxoplasma gondii”, International Journal for Parasitology , vol. 48, no. 12, pp. 955-968, 2018.
R. Shivapurkar, Hingamire, T., Kulkarni, A. S., Rajamohanan, P. R., D. Reddy, S., and Shanmugam, D., “Evaluating antimalarial efficacy by tracking glycolysis in Plasmodium falciparum using NMR spectroscopy”, Scientific Reports, vol. 8, 2018.
A. Prabhu, Shanmugam, D., and Gadgil, M., “Engineering nucleotide sugar synthesis pathways for independent and simultaneous modulation of N-glycan galactosylation and fucosylation in CHO cells”, Metabolic Engineering, vol. 74, pp. 61-71, 2022.
P. R. Athawale, Jachak, G., Shukla, A., Shanmugam, D., and Reddy, S., “Efforts to access the potent antitrypanosomal marine natural product janadolide: synthesis of des- tert -butyl janadolide and its biological evaluation”, ACS Omega, 2018.
K. Verma, Saxena, K., Donaka, R., Chaphalkar, A., Rai, M. Kumar, Shukla, A., Zaidi, Z., Dandage, R., Shanmugam, D., and Chakraborty, K., “Distinct metabolic states of a cell guide alternate fates of mutational buffering through altered proteostasis”, Nature Communications, vol. 11, no. 1, p. 2926, 2020.
B. Subramani, Shantamurthy, C. D., Maru, P., Belekar, M. A., Mardhekar, S., Shanmugam, D., and Kikkeri, R., “Demystifying a hexuronic acid ligand that recognizes Toxoplasma gondii and blocks its invasion into host cells”, Organic & Biomolecular Chemistry, vol. 17, no. 18, pp. 4535-4542, 2019.
J. D. Lykins, Filippova, E. V., Halavaty, A. S., Minasov, G., Zhou, Y., Dubrovska, I., Flores, K. J., Shuvalova, L. A., Ruan, J., Bissati, K. El, Dovgin, S., Roberts, C. W., Woods, S., Moulton, J. D., Moulton, H., Mcphillie, M. J., Muench, S. P., Fishwick, C. W. G., Sabini, E., Shanmugam, D., Roos, D. S., Mcleod, R., Anderson, W. F., and Ngo, H. M., “CSGID solves structures and identifies phenotypes for five enzymes in toxoplasma gondii”, Frontiers in Cellular and Infection Microbiology, vol. 8, 2018.
J. Behari, Borkar, P., Vindu, A., Dandewad, V., Upadrasta, S., Shanmugam, D., and Seshadri, V., “Conserved RNA binding activity of phosphatidyl inositol 5-phosphate 4-kinase (PIP4K2A)”, Frontiers in Molecular Biosciences, vol. 8, p. 631281, 2021.
R. S. Coyne, Hannick, L., Shanmugam, D., Hostetler, J. B., Brami, D., Joardar, V. S., Johnson, J., Radune, D., Singh, I., Badger, J. H., Kumar, U., Saier, M., Wang, Y., Cai, H., Gu, J., Mather, M. W., Vaidya, A. B., Wilkes, D. E., Rajagopalan, V., Asai, D. J., Pearson, C. G., Findly, R. C., Dickerson, H. W., Wu, M., Martens, C., Van de Peer, Y., Roos, D. S., Cassidy-Hanley, D. M., and Clark, T. G., “Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control”, Genome Biology, vol. 12, no. 10, p. Article Number: R100, 2011.
A. James Reid, Vermont, S. J., Cotton, J. A., Harris, D., Hill-Cawthorne, G. A., Koenen-Waisman, S., Latham, S. M., Mourier, T., Norton, R., Quail, M. A., Sanders, M., Shanmugam, D., Sohal, A., Wasmuth, J. D., Brunk, B., Grigg, M. E., Howard, J. C., Parkinson, J., Roos, D. S., Trees, A. J., Berriman, M., Pain, A., and Wastling, J. M., “Comparative genomics of the apicomplexan parasites toxoplasma gondii and neospora caninum: coccidia differing in host range and transmission strategy”, Plos Pathogens, vol. 8, no. 3, 2012.
M. K. Singh, Jayarajan, R., Varshney, S., Upadrasta, S., Singh, A., Yadav, R., Scaria, V., Sengupta, S., Shanmugam, D., Shalimar,, Sivasubbu, S., Gandotra, S., and Sachidanandan, C., “Chronic systemic exposure to IL6 leads to deregulation of glycolysis and fat accumulation in the zebrafish liver”, Biochimica ET Biophysica Acta-Molecular and Cell Biology of Lipids, vol. 1866, no. 5, p. 158905, 2021.
Y. H. Woo, Ansari, H., Otto, T. D., Klinger, C. M., Kolisko, M., Michalek, J., Saxena, A., Shanmugam, D., Tayyrov, A., Veluchamy, A., Ali, S., Bernal, A., del Campo, J., Cihlar, J., Flegontov, P., Gornik, S. G., Hajduskova, E., Horak, A., Janouskovec, J., Katris, N. J., Mast, F. D., Miranda-Saavedra, D., Mourier, T., Naeem, R., Nair, M., Panigrahi, A. K., Rawlings, N. D., Padron-Regalado, E., Ramaprasad, A., Samad, N., Tomcala, A., Wilkes, J., Neafsey, D. E., Doerig, C., Bowler, C., Keeling, P. J., Roos, D. S., Dacks, J. B., Templeton, T. J., Waller, R. F., Lukes, J., Obornik, M., and Pain, A., “Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites”, Elife, vol. 4, p. Article Number: e06974, 2015.
R. Godbole, Gaur, A., Nayar, P., Kiruthiga, K., D'Costa, P., Manchanda, R., Khilari, A., Shanmugam, D., Muglikar, K. D., and Kundu, K., “Case report: a fatal case of babesiosis in a splenectomized male patient from Western India”, American Journal of Tropical Medicine and Hygiene, vol. 106, no. 5, pp. 1421-1425, 2022.
A. Kumar Sahu, Said, M. S., Hingamire, T., Gaur, M., Khan, A., Shanmugam, D., Barvkar, V. T., Dharne, M. S., Bharde, A. A., and Dastager, S. G., “Approach to nigericin derivatives and their therapeutic potential”, RSC Advances, vol. 10, no. 70, pp. 43085-43091, 2020.
R. Lochana Panchangam, Rao, R. Nishanth, Balamurali, M. Motilal, Hingamire, T. B., Shanmugam, D., Manickam, V., and Chanda, K., “Antitumor effects of Ir(III)-2H-indazole complexes for triple negative breast cancer”, Inorganic Chemistry, vol. 60, no. 23, pp. 17593-17607, 2021.