biblio

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Journal Article
L. Narlikar and Jothi, R., “ChIP-Seq data analysis: identification of protein-DNA binding sites with SISSRs peak-finder”, Methods in molecular biology, vol. 802, pp. 305-22, 2012.
L. Taher, Narlikar, L., and Ovcharenko, I., “Clare: cracking the language of regulatory elements”, Bioinformatics, vol. 28, no. 4, pp. 581-583, 2012.
S. Mitra, Biswas, A., and Narlikar, L., “Diversity in binding, regulation, and evolution revealed from high-throughput ChIP”, PLoS Computational Biology, vol. 14, no. 4, p. Article Number: e1006090, 2018.
L. Taher, Narlikar, L., and Ovcharenko, I., “Identification and computational analysis of gene regulatory elements”, Cold Spring Harbor Protocols, vol. 1, 2015.
L. Narlikar, “Multiple novel promoter-architectures revealed by decoding the hidden heterogeneity within the genome”, Nucleic Acids Research, vol. 42, no. 20, pp. 12388-12403, 2014.
L. Narlikar, “MuMoD: a bayesian approach to detect multiple modes of protein-DNA binding from genome-wide ChIP data”, Nucleic Acids Research, vol. 41, no. 1, pp. 21-32, 2013.
S. Mitra and Narlikar, L., “No promoter left behind (NPLB): learn de novo promoter architectures from genome-wide transcription start sites”, Bioinformatics, vol. 32, no. 5, pp. 779-781, 2016.
L. Narlikar, Mehta, N., Galande, S., and Arjunwadkar, M., “One size does not fit all: on how markov model order dictates performance of genomic sequence analyses”, Nucleic Acids Research, vol. 41, no. 3, pp. 1416-1424, 2013.
L. Sreekumar, Kumari, K., Guin, K., Bakshi, A., Varshney, N., Thimmappa, B. C., Narlikar, L., Padinhateeri, R., Siddharthan, R., and Sanyal, K., “Orc4 spatiotemporally stabilizes centromeric chromatin”, Genome Research, vol. 31, no. 4, pp. 607-621, 2021.
A. Biswas and Narlikar, L., “Resolving diverse protein-DNA footprints from exonuclease-based ChIP experiments”, Bioinformatics, vol. 37, pp. I367-I375, 2021.
A. Agrawal, Sambare, S. V., Narlikar, L., and Siddharthan, R., “THiCweed: fast, sensitive detection of sequence features by clustering big datasets”, Nucleic Acids Research, vol. 46, no. 5, p. e29, 2018.
A. Biswas and Narlikar, L., “A universal framework for detecting cis-regulatory diversity in DNA regions”, Genome Research, vol. 31, no. 9, pp. 1646-1662, 2021.