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A
A. Ghosh, Pandey, S. Prakash, Ansari, A. Hussain, Sundar, J. Seematti, Singh, P., Khan, Y., Ekka, M. Krishna, Chakraborty, D., and Maiti, S., “Alternative splicing modulation mediated by G-quadruplex structures in MALAT1 lncRNA”, Nucleic Acids Research, vol. 50, no. 1, pp. 378-396, 2022.
H. Suryawanshi, Lalwani, M. Kumar, Ramasamy, S., Rana, R., Scaria, V., Sivasubbu, S., and Maiti, S., “Antagonism of microRNA function in zebrafish embryos by using locked nucleic acid enzymes (LNAzymes)”, Chembiochem, vol. 13, no. 4, pp. 584-589, 2012.
S. Nahar, Bose, D., Panja, S. Kumar, Saha, S., and Maiti, S., “Anti-cancer therapeutic potential of quinazoline based small molecules via global upregulation of miRNAs”, Chemical Communications, vol. 50, no. 35, pp. 4639-4642, 2014.
B
T. Bose, Banerjee, A., Nahar, S., Maiti, S., and Kumar, V. A., “Beta, gamma-Bis-substituted PNA with configurational and conformational switch: preferred binding to cDNA/RNA and cell-uptake studies”, Chemical Communications, vol. 51, no. 36, pp. 7693-7696, 2015.
C
S. Nahar, Bose, D., Pal, S., Chakraborty, T. Kanti, and Maiti, S., “Cyclic cationic peptides containing sugar amino acids selectively distinguishes and inhibits maturation of pre-mirnas of the same family”, Nucleic Acid Therapeutics, vol. 25, no. 6, pp. 323-329, 2015.
D
M. Halimani, S. Chandran, P., Kashyap, S., Jadhav, V. M., Prasad, B. L. V., Hotha, S., and Maiti, S., “Dendritic effect of ligand-coated nanoparticles: enhanced apoptotic activity of silica-berberine nanoconjugates”, Langmuir, vol. 25, no. 4, pp. 2339-2347, 2009.
E
S. Kumar and Maiti, S., “Effect of different arginine methylations on the thermodynamics of tat peptide binding to HIV-1 TAR RNA”, Biochimie, vol. 95, no. 7, pp. 1422-1431, 2013.
S. Pandey, Agarwala, P., and Maiti, S., “Effect of loops and G-quartets on the stability of RNA G-quadruplexes”, Journal of Physical Chemistry B, vol. 117, no. 23, pp. 6896-6905, 2013.
S. Kumar and Maiti, S., “Effect of N-acetylation and N-methylation of lysine residue of tat peptide on its interaction with HIV-1 TAR RNA”, Plos One, vol. 8, no. 10, p. UNSP e77595, 2013.
H. Kaur, Arora, A., Gogoi, K., Solanke, P., Gunjal, A. D., Kumar, V. A., and Maiti, S., “Effects for the incorporation of five-atom thioacetamido nucleic acid (TANA) backbone on hybridization thermodynamics and kinetics of DNA duplexes”, Journal of Physical Chemistry B, vol. 113, no. 9, pp. 2944-2951, 2009.
F
M. Kumar, Gulati, S., Ansari, A. H., Phutela, R., Acharya, S., Azhar, M., Murthy, J., Kathpalia, P., Kanakan, A., Maurya, R., Vasudevan, J. Srinivasa, Aparna, S., Pandey, R., Maiti, S., and Chakraborty, D., “FnCas9-based CRISPR diagnostic for rapid and accurate detection of major SARS-CoV-2 variants on a paper strip”, eLife, vol. 10, p. e67130, 2021.
S. Acharya, Mishra, A., Paul, D., Ansari, A. Hussain, Azhar, M., Kumar, M., Rauthan, R., Sharma, N., Aich, M., Sinha, D., Sharma, S., Jain, S., Ray, A., Jain, S., Ramalingam, S., Maiti, S., and Chakraborty, D., “Francisella novicida Cas9 interrogates genomic DNA with very high specificity and can be used for mammalian genome editing”, Proceedings of the National Academy of Sciences of the United States of America, vol. 116, no. 42, pp. 20959-20968, 2019.
G
S. Shekhar Roy, Sharma, S., Rizvi, Z. Abbas, Sinha, D., Gupta, D., Rophina, M., Sehgal, P., Sadhu, S., Tripathy, M. Ranjan, Samal, S., Maiti, S., Scaria, V., Sivasubbu, S., Awasthi, A., Harshan, K. H., Jain, S., and Chowdhury, S., “G4-binding drugs, chlorpromazine and prochlorperazine, repurposed against COVID-19 infection in hamsters”, Frontiers in Molecular Biosciences, vol. 10, p. 1133123, 2023.
P. Agarwala, Pandey, S., Mapa, K., and Maiti, S., “G-quadruplex augments translation in the 5 ` untranslated region of transforming growth factor beta 2”, Biochemistry, vol. 52, no. 9, pp. 1528-1538, 2013.
S. Nahar, Sehgal, P., Azhar, M., Rai, M., Singh, A., Sivasubbu, S., Chakraborty, D., and Maiti, S., “G-quadruplex motif at the 3' end of sgRNAs improves CRISPR-Cas9 based genome editing efficiency”, Chemical Communications, vol. 54, no. 19, pp. 2377-2380, 2018.
P. Agarwala, Pandey, S., and Maiti, S., “G-Quadruplexes as tools for synthetic biology”, Chembiochem, vol. 14, no. 16, pp. 2077-2081, 2013.
H
P. Agarwala, Kumar, S., Pandey, S., and Maiti, S., “Human telomeric RNA G-quadruplex response to point mutation in the G-quartets”, Journal of Physical Chemistry B, vol. 119, no. 13, pp. 4617-4627, 2015.
I
A. Ghosh, Pandey, S. Prakash, Joshi, D. Chandra, Rana, P., Ansari, A. Hussain, Sundar, J. Seematti, Singh, P., Khan, Y., Ekka, M. Krishna, Chakraborty, D., and Maiti, S., “Identification of G-quadruplex structures in MALAT1 lncRNA that interact with nucleolin and nucleophosmin”, Nucleic Acids Research, vol. 51, no. 17, pp. 9415-9431, 2023.
T. Agarwal, Pradhan, D., Geci, I., El-Madani, A. M., Petersen, M., Pedersen, E. B., and Maiti, S., “Improved inhibition of telomerase by short twisted intercalating nucleic acids under molecular crowding conditions”, Nucleic Acid Therapeutics, vol. 22, no. 6, pp. 399-404, 2012.
T. Agarwal, Roy, S., Kumar, S., Chakraborty, T. Kanti, and Maiti, S., “In the sense of transcription regulation by G-quadruplexes: asymmetric effects in sense and antisense strands”, Biochemistry, vol. 53, no. 23, pp. 3711-3718, 2014.
A. Mishra, Ekka, M. Krishna, and Maiti, S., “Influence of ionic liquids on thermodynamics of small molecule DNA interaction: the binding of ethidium bromide to calf thymus DNA”, Journal of Physical Chemistry B, vol. 120, no. 10, pp. 2691-2700, 2016.
S. Nahar, Kotikam, V., Kumar, V. A., and Maiti, S., “Inhibition of miR-21 by 3 `/5 `-serinyl-capped 2 `-O-Methyl RNA Interspersed with 2 `-O-(2-Amino-3-Methoxypropyl) uridine units”, Nucleic Acid Therapeutics, vol. 26, no. 5, pp. 327-334, 2016.
K
D. Santhiya, Dias, R. S., Dutta, S., Das, P. Kumar, Miguel, M. G., Lindman, B., and Maiti, S., “Kinetic studies of amino acid-based surfactant binding to DNA”, Journal of Physical Chemistry B, vol. 116, pp. 5831-5837, 2012.
M
D. Bose, Jayaraj, G. Gunanathan, Kumar, S., and Maiti, S., “Molecular-beacon-based screen for small molecule inhibitors of miRNA maturation”, ACS Chemical Biology, vol. 8, no. 5, pp. 930-938, 2013.
T. Agarwal, Lalwani, M. Kumar, Kumar, S., Roy, S., Chakraborty, T. Kanti, Sivasubbu, S., and Maiti, S., “Morphological effects of G-quadruplex stabilization using a small molecule in zebrafish”, Biochemistry, vol. 53, no. 7, pp. 1117-1124, 2014.
N
G. Gunanathan Jayaraj, Nahar, S., and Maiti, S., “Nonconventional chemical inhibitors of microRNA: therapeutic scope”, Chemical Communications, vol. 51, no. 5, pp. 820-831, 2015.
P
S. Nahar, Ranjan, N., Ray, A., Arya, D. P., and Maiti, S., “Potent inhibition of miR-27a by neomycin-bisbenzimidazole conjugates”, Chemical Science, vol. 6, no. 10, pp. 5837-5846, 2015.
R
M. Azhar, Phutela, R., Kumar, M., Ansari, A. Hussain, Rauthan, R., Gulati, S., Sharma, N., Sinha, D., Sharma, S., Singh, S., Acharya, S., Sarkar, S., Paul, D., Kathpalia, P., Aich, M., Sehgal, P., Ranjan, G., Bhoyar, R. C., Singhal, K., Lad, H., Patra, P. Kumar, Makharia, G., Chandak, G. Ratan, Pesala, B., Chakraborty, D., Maiti, S., and Epide, I. CoV. 2 Genom, “Rapid and accurate nucleobase detection using FnCas9 and its application in COVID-19 diagnosis”, Biosensors & Bioelectronics, vol. 183, p. 113207, 2021.
D. Chakraborty, Agrawal, A., and Maiti, S., “Rapid identification and tracking of SARS-CoV-2 variants of concern”, Lancet, vol. 397, no. 10282, pp. 1346-1347, 2021.
S. Pandey, Agarwala, P., Jayaraj, G. Gunanathan, Gargallo, R., and Maiti, S., “RNA stem-loop to G-quadruplex equilibrium controls mature MicroRNA production inside the cell”, Biochemistry, vol. 54, no. 48, pp. 7067-7078, 2015.
P. Agarwala, Pandey, S., and Maiti, S., “Role of G-quadruplex located at 5 end of mRNAs”, Biochimica Et Biophysica Acta-General Subjects, vol. 1840, no. 12, pp. 3503-3510, 2014.
S
D. Bose, Nahar, S., Rai, M. Kumar, Ray, A., Chakraborty, K., and Maiti, S., “Selective inhibition of miR-21 by phage display screened peptide”, Nucleic Acids Research, vol. 43, no. 8, pp. 4342-4352, 2015.
Y. Silla, Chandamouli, B., Maiti, S., and Sengupta, S., “Single nucleotide polymorphism in transcobalamin II (15V) induces structural changes in the protein as revealed by molecular modeling studies”, Biochemistry, vol. 50, no. 8, pp. 1396-1402, 2011.
G. S. Bhosle, Kharche, S., Kumar, S., Sengupta, D., Maiti, S., and Fernandes, M., “Superior HIV-1 TAR binders with conformationally constrained R52 arginine mimics in the Tat(48-57) peptide”, Chemmedchem, vol. 13, no. 3, pp. 220-226, 2018.
S. Nahar, Singh, A., Morihiro, K., Moai, Y., Kodama, T., Obika, S., and Maiti, S., “Systematic evaluation of biophysical and functional characteristics of selenomethylene-locked nucleic acid-mediated inhibition of miR-21”, Biochemistry, vol. 55, no. 50, pp. 7023-7032, 2016.
T
P. Agarwala, Pandey, S., and Maiti, S., “Tale of RNA G-quadruplex”, Organic & Biomolecular Chemistry, vol. 13, no. 20, pp. 5570-5585, 2015.
J. Thomas George, Azhar, M., Aich, M., Sinha, D., Ambi, U. B., Maiti, S., Chakraborty, D., and Srivatsan, S. G., “Terminal uridylyl transferase mediated site-directed access to clickable chromatin employing CRISPR-dCas9”, Journal of the American Chemical Society, vol. 142, no. 32, pp. 13954-13965, 2020.
T. Goel, Kumar, S., and Maiti, S., “Thermodynamics and solvation dynamics of BIV TAR RNA-Tat peptide interaction”, Molecular Biosystems, vol. 9, no. 1, pp. 88-98, 2013.
D. Bose, Jayaraj, G. Gunanathan, Suryawanshi, H., Agarwala, P., Pore, S. Kumar, Banerjee, R., and Maiti, S., “Tuberculosis drug streptomycin as a potential cancer therapeutic: inhibition of miR-21 function by directly targeting its precursor”, Angewandte Chemie-International Edition, vol. 51, no. 4, pp. 1019-1023, 2012.
U
S. Kumar, Mapa, K., and Maiti, S., “Understanding the effect of locked nucleic acid and 2 `-O-methyl modification on the hybridization thermodynamics of a miRNA-mRNA pair in the presence and absence of AfPiwi protein”, Biochemistry, vol. 53, no. 10, pp. 1607-1615, 2014.