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Journal Article
P. Panigrahi, Sule, M., Ghanate, A., Ramasamy, S., and Suresh, C. G., “Engineering proteins for thermostability with iRDP web server”, Plos One, vol. 10, no. 10, p. e0139486, 2015.
Y. Kumar, Zhang, L., Panigrahi, P., Dholakia, B. B., Dewangan, V., Chavan, S. G., Kunjir, S. M., Wu, X., Li, N., Rajmohanan, P. R., Kadoo, N. Y., Giri, A. P., Tang, H., and Gupta, V. S., “Fusarium oxysporum mediates systems metabolic reprogramming of chickpea roots as revealed by a combination of proteomics and metabolomics”, Plant Biotechnology Journal, vol. 14, no. 7, pp. 1589-1603, 2016.
P. Panigrahi, Sule, M., Sharma, R., Ramasamy, S., and Suresh, C. G., “Improved method for specificity annotation shows a distinct evolutionary divergence among the microbial enzymes of the cholylglycine hydrolase family”, Microbiology-SGM, vol. 160, pp. 1162-1174, 2014.
R. Sharma, Panigrahi, P., and Suresh, C. G., “In-Silico analysis of binding site features and substrate selectivity in plant flavonoid-3-o glycosyltransferases (F3GT) through molecular modeling, docking and dynamics simulation studies”, Plos One, vol. 9, no. 3, p. e92636, 2014.
Y. Kumar, Dholakia, B. B., Panigrahi, P., Kadoo, N. Y., Giri, A. P., and Gupta, V. S., “Metabolic profiling of chickpea-Fusarium interaction identifies differential modulation of disease resistance pathways”, Phytochemistry, vol. 116, pp. 120-129, 2015.
R. Mukherji, Varshney, N. Kumar, Panigrahi, P., Suresh, C. G., and Prabhune, A., “New role for penicillin acylases: degradation of acyl homoserine lactone quorum sensing signals by Kluyvera citrophila penicillin G acylase”, Enzyme and Microbial Technology , vol. 56, pp. 1-7, 2014.
P. Panigrahi, Chand, D., Mukherji, R., Ramasamy, S., and Suresh, C. G., “Sequence and structure-based comparative analysis to assess, identify and improve the thermostability of penicillin G acylases”, Journal of Industrial Microbiology & Biotechnology, vol. 42, no. 11, pp. 1493-1506, 2015.
V. Sunder Avinash, Panigrahi, P., Chand, D., Pundle, A., Suresh, C. Gopalan, and Ramasamy, S., “Structural analysis of a penicillin V acylase from pectobacterium atrosepticum confirms the importance of two Trp residues for activity and specificity”, Journal of Structural Biology, vol. 193, no. 2, pp. 85-94, 2016.
V. Sunder Avinash, Panigrahi, P., Suresh, C. G., Pundle, A. V., and Ramasamy, S., “Structural modelling of substrate binding and inhibition in penicillin V acylase from pectobacterium atrosepticum”, Biochemical and Biophysical Research Communications, vol. 437, no. 4, pp. 538-543, 2013.
D. Chand, Varshney, N. K., Ramasamy, S., Panigrahi, P., Brannigan, J. A., Wilkinson, A. J., and Suresh, C. G., “Structure mediation in substrate binding and post-translational processing of penicillin acylases: Information from mutant structures of Kluyvera citrophila penicillin G acylase”, Protein Science, vol. 24, no. 10, pp. 1660-1670, 2015.
D. Chand, Panigrahi, P., Ramasamy, S., and Suresh, C. G., “Structure of highly active BSH enzyme with subordinated post-translational excision”, Acta Crystallographica A‐Foundation and Advances, vol. 70, p. C272, 2014.