biblio

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2015
A. Subramanian and Sarkar, R. Rup, “Comparison of codon usage bias across leishmania and trypanosomatids to understand mRNA secondary structure, relative protein abundance and pathway functions”, Genomics, vol. 106, no. 4, pp. 232-241, 2015.
A. Subramanian and Sarkar, R. Rup, “Data in support of large scale comparative codon usage analysis in leishmania and trypanosomatids”, Data Brief, vol. 4, no. C, pp. 269-272, 2015.
A. Subramanian, Jhawar, J., and Sarkar, R. Rup, “Dissecting leishmania infantum energy metabolism - a systems perspective”, Plos One, vol. 10, no. 9, p. Article Number: e0137976, 2015.
A. Subramanian and Sarkar, R. Rup, “Dynamics of gli regulation and a strategy to control cancerous situation: hedgehog signaling pathway revisited”, Journal of Biological Systems, vol. 23, no. 4, pp. 681-719, 2015.
R. Bhowmick, Subramanian, A., and Sarkar, R. Rup, “Exploring the differences in metabolic behavior of astrocyte and glioblastoma: a flux balance analysis approach”, Systems and Synthetic Biology, vol. 9, no. 4, pp. 159-177, 2015.
A. Subramanian, Singh, V., and Sarkar, R. Rup, “Understanding visceral leishmaniasis disease transmission and its control - a study based on mathematical modelling”, Mathematics, vol. 3, no. 3, pp. 913-344, 2015.
2016
A. Subramanian and Sarkar, R. Rup, “Network structure and enzymatic evolution in Leishmania metabolism: a computational study”, in Proceedings of the International Symposium on Mathematical and Computational Biology-BIOMAT 2015, Roorkee, Uttarakhand, India, 2016.
2017
S. Banerjee, Subramanian, A., Chattopadhyay, J., and Sarkar, R. Rup, “Exploring the role of GS-GOGAT cycle in microcystin synthesis and regulation - a model based analysis”, Molecular Biosystems, vol. 13, no. 12, pp. 2603-2614, 2017.
S. Nandi, Subramanian, A., and Sarkar, R. Rup, “Integrative machine learning strategy for improved prediction of essential genes in Escherichia coli metabolism using flux-coupled features”, Molecular Biosystems, vol. 13, no. 8, pp. 1584-1596, 2017.
S. Biswas, Subramanian, A., Elmojtaba, I. M., Chattopadhyay, J., and Sarkar, R. Rup, “Optimal combinations of control strategies and cost-effective analysis for visceral leishmaniasis disease transmission”, PLoS ONE, vol. 12, no. 2, 2017.
A. Subramanian and Sarkar, R. Rup, “Revealing the mystery of metabolic adaptations using a genome scale model of Leishmania infantum”, Scientific Reports, vol. 7, no. Article Number: 10262, 2017.
2018
A. Subramanian and Sarkar, R. Rup, “Evolutionary perspectives of genotype-phenotype factors in leishmania metabolism”, Journal of Molecular Evolution, vol. 86, no. 7, pp. 443-456, 2018.
A. Subramanian and Sarkar, R. Rup, “Perspectives on leishmania species and stage-specific adaptive mechanisms”, Trends In Parasitology, vol. 34, no. 12, p. 10.1016/j.pt.2018.09.004, 2018.