The critical helping hand of water: theory shows the way to obtain elusive, granular information about kinetic asymmetry driven systems

TitleThe critical helping hand of water: theory shows the way to obtain elusive, granular information about kinetic asymmetry driven systems
Publication TypeJournal Article
Year of Publication2025
AuthorsBajpai, P, Thulasiram, S, Vanka, K
JournalChemical Science
Volume16
Issue33
Pagination14940-14955
Date PublishedAUG
Type of ArticleArticle
ISSN2041-6520
Abstract

Kinetic asymmetry is crucial in chemical systems where the selective synthesis of one product over another, or the acceleration of specific reaction(s) is necessary. However, obtaining precise information with current experimental methods about the behavior of such systems as a function of time, substrate concentration and other relevant factors, is not possible. Computational chemistry provides a powerful means to address this problem. The current study unveils a two-pronged computational approach: (i) full quantum chemical studies with density functional theory (DFT), followed by (ii) stochastic simulations with a validated Gillespie algorithm (GA) (using representative model systems where necessary), to study the behavior of a kinetic asymmetry driven unidirectional molecular motor (1-phenylpyrrole2,2 `-dicarboxylic acid) (Nature, 2022, 604 (7904), 80-85). Our approach allows us to understand what is really taking place in the system, underlining the crucial role played by water molecules in facilitating the rotation of the motor. It is seen that water lubricates the motion by increasing the rotation rate constant of the final step by, remarkably, more than ten orders of magnitude! These insights further serve to explain the efficient rotation of the very recently reported gel-embedded molecular motor (Nature, 2025, 637 (8046), 594-600), providing an upper limit for the allowed rotation barrier in such systems, and thus also casts light into the functioning of bio-molecular motors. The current work therefore provides a template for carefully and properly studying a wide variety of important, kinetic asymmetry driven systems in the future.

DOI10.1039/d5sc03256c
Type of Journal (Indian or Foreign)

Foreign

Impact Factor (IF)

7.5

Divison category: 
Physical and Materials Chemistry
Database: 
Web of Science (WoS)

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