Nanopore sequencing of RAGE gene polymorphisms and their association with type 2 diabetes
Title | Nanopore sequencing of RAGE gene polymorphisms and their association with type 2 diabetes |
Publication Type | Journal Article |
Year of Publication | 2023 |
Authors | Chaurasiya, AH, Khilari, AA, Kazi, R, Jaiswal, MR, Bhoite, GM, Padwal, MK, Momin, AA, Shanmugam, D, Kulkarni, MJ |
Journal | ACS Omega |
Volume | 8 |
Issue | 29 |
Pagination | 25727-25738 |
Date Published | JUL |
Type of Article | Article |
ISSN | 2470-1343 |
Abstract | The receptor foradvanced glycation end products (RAGE)is a transmembraneprotein that interacts with its ligands, advanced glycation end products(AGEs). AGEs are elevated in diabetes and diabetic complications,leading to increased oxidative stress and activation of pro-inflammatorypathways facilitated by AGE-RAGE signaling. Polymorphisms inthe RAGE gene can potentially affect AGE-RAGEinteraction and its downstream signaling, which plays a crucial rolein the progression of diabetes and its complications. In this study,we used nanopore sequencing for genotyping of RAGE polymorphism and identified a maximum number of 33 polymorphisms,including two previously unreported novel mutations in a cohort ofhealthy, type 2 diabetics without nephropathy and type 2 diabeticswith nephropathy in order to identify associations. Two novel RAGE polymorphisms in the intron 8 and 3 & PRIME;UTR regionat genomic locations 32181834 and 32181132, respectively, were detectedwith a low frequency. For four previously reported polymorphisms,cross-validation by PCR-RFLP showed 99.75% concordance with nanoporesequencing. Analysis of genotype distribution and allele frequenciesrevealed that five single nucleotide polymorphisms, i.e., rs1800625,rs3131300, rs3134940, rs2070600, and rs9391855, were associated withan increased risk for type 2 diabetes. |
DOI | 10.1021/acsomega.3c00297 |
Type of Journal (Indian or Foreign) | Foreign |
Impact Factor (IF) | 4.1 |
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