Structural insight of NICD-MAML interactions: virtual screening, docking and molecular dynamics study for the identification of potential inhibitor

TitleStructural insight of NICD-MAML interactions: virtual screening, docking and molecular dynamics study for the identification of potential inhibitor
Publication TypeJournal Article
Year of Publication2016
AuthorsSinha, N, Chowdhury, S, Sarkar, RRup
JournalLetters in Drug Design & Discovery
Volume13
Issue4
Pagination301-313
Date PublishedJAN
ISSN1570-1808
Keywordsfree energy of binding, MAML, NICD, Notch signalling, potential inhibitor, ZINC01690699
Abstract

Activation of Notch signalling pathway is triggered by binding of NICD to transcription factor CSL and transcriptional co-activator MAML, which involves in various biological functions as well as progression of diseases. Recent prediction shows suppression of cancer causing genes of this pathway through inhibition of NICD-MAML interaction. Through virtual screening against ``NCI Diversity 3'' of Zinc database, we identified a potential inhibitor ``ZINC01690699'' (1-N,4-N-bis[3-(1H-benzimidazol-2-yl)phenyl]benzene-1,4-dicarboxamide; 1-N, 4-dicarboxamide) possessing highest binding affinity to block the two distinct Binding Sites of NICD to inhibit NICD-MAML interaction and also found the most imperative and essential Binding Site (Site I). Inhibition of this interaction caused by binding of ZINC01690699 is validated by protein-protein docking and the prolonged binding as well as stability of NICD-Inhibitor complex is supported by molecular dynamics simulation. The study not only identifies the best inhibitor but also proposes a potential drug for the treatment of cancers.

DOI10.2174/1570180812666150819003634
Type of Journal (Indian or Foreign)

Foreign

Impact Factor (IF)

0.974

Divison category: 
Chemical Engineering & Process Development