Visual exploration of microbiome data

TitleVisual exploration of microbiome data
Publication TypeJournal Article
Year of Publication2019
AuthorsKuntal, BK, Mande, SS
JournalJournal of Biosciences
Volume44
Issue5
Type of ArticleReview
Abstract

A dramatic increase in large-scale cross-sectional and temporal-level metagenomic experiments has led to an improved understanding of the microbiome and its role in human well-being. Consequently, a plethora of analytical methods has been developed to decipher microbial biomarkers for various diseases, cluster different ecosystems based on microbial content, and infer functional potential of the microbiome as well as analyze its temporal behavior. Development of user-friendly visualization methods and frameworks is necessary to analyze this data and infer taxonomic and functional patterns corresponding to a phenotype. Thus, new methods as well as application of pre-existing ones has gained importance in recent times pertaining to the huge volume of the generated microbiome data. In this reveiw, we present a brief overview of some useful visualization techniques that have significantly enriched microbiome data analytics.

DOI10.1007/s12038-019-9933-z
Type of Journal (Indian or Foreign)

Foreign

Impact Factor (IF)

1.419

Divison category: 
Chemical Engineering & Process Development

Add new comment