Synthesis and fluorescence properties of a full set of extended RNA base analogues

TitleSynthesis and fluorescence properties of a full set of extended RNA base analogues
Publication TypeJournal Article
Year of Publication2013
AuthorsSabale, PM, Nuthanakanti, A, Srivatsan, SG
JournalIndian Journal of Chemistry Section A-Inorganic Bio-Inorganic Physical Theoretical & Analytical Chemistry
Volume52
Issue8-9
Pagination1004-1013
Date PublishedAUG
ISSN0376-4710
KeywordsEnvironment sensitive probes, Fluorescence probes, Fluorescence spectroscopy, Nucleic acids, Ribonucleoside analogues
Abstract

The synthesis and photophysical characterization of a complete set of fluorescent RNA base analogues derived by conjugating benzofuran moiety at the 5- and 8-positions of pyrimidine and purine bases, respectively, are described. Benzofuran-modified pyrimidine and purine ribonucleoside analogues exhibit Contrasting fluorescence properties. Pyrimidine analogues are moderately emissive with emission maximum in the visible region, and importantly, are highly sensitive to solvent polarity and Viscosity changes. On the other hand, purine analogues are highly emissive and are minimally affected by solvation. and viscosity effects. Thorough photophysical analysis reveals that the pyrimidine and purine ribonucleosides displaying distinct and-probe-like fluorescence properties could be useful in designing nucleic acid based biophysical tools to study nucleic acid structure and function.

Type of Journal (Indian or Foreign)Indian
Impact Factor (IF)0.628
Divison category: 
Physical and Materials Chemistry