Structural studies on 10-hydroxygeraniol dehydrogenase: a novel linear substrate-specific dehydrogenase from Catharanthus roseus

TitleStructural studies on 10-hydroxygeraniol dehydrogenase: a novel linear substrate-specific dehydrogenase from Catharanthus roseus
Publication TypeJournal Article
Year of Publication2020
AuthorsSandholu, AS, Mujawar, SP, Ramakrishnan, K, Thulasiram, HV, Kulkarni, K
JournalProteins-Structure Function and Bioinformatics
Volume88
Issue9
Pagination1197-1206
Date PublishedSEP
Type of ArticleArticle
ISSN0887-3585
Keywords10-hydroxygeraniol dehydrogenase, iridoid biosynthesis, medium-chain dehydrogenase, monoterpene indole alkaloids, reductase, X-ray crystallography
Abstract

Conversion of 10-hydroxygeraniol to 10-oxogeranial is a crucial step in iridoid biosynthesis. This reaction is catalyzed by a zinc-dependent alcohol dehydrogenase, 10-hydroxygeraniol dehydrogenase, belonging to the family of medium-chain dehydrogenase/reductase (MDR). Here, we report the crystal structures of a novel 10-hydroxygeraniol dehydrogenase from Catharanthus roseus in its apo and nicotinamide adenine dinucleotide phosphate (NADP(+)) bound forms. Structural analysis and docking studies reveal how subtle conformational differences of loops L1, L2, L3, and helix alpha 9' at the orifice of the catalytic site confer differential activity of the enzyme toward various substrates, by modulating the binding pocket shape and volume. The present study, first of its kind, provides insights into the structural basis of substrate specificity of MDRs specific to linear substrates. Furthermore, comparison of apo and NADP(+) bound structures suggests that the enzyme adopts open and closed states to facilitate cofactor binding.

DOI10.1002/prot.25891, Early Access Date = MAR 2020
Type of Journal (Indian or Foreign)

Foreign

Impact Factor (IF)

2.828

Divison category: 
Biochemical Sciences
Organic Chemistry

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