Structural insight of NICD-MAML interactions: virtual screening, docking and molecular dynamics study for the identification of potential inhibitor
Title | Structural insight of NICD-MAML interactions: virtual screening, docking and molecular dynamics study for the identification of potential inhibitor |
Publication Type | Journal Article |
Year of Publication | 2016 |
Authors | Sinha, N, Chowdhury, S, Sarkar, RRup |
Journal | Letters in Drug Design & Discovery |
Volume | 13 |
Issue | 4 |
Pagination | 301-313 |
Date Published | JAN |
ISSN | 1570-1808 |
Keywords | free energy of binding, MAML, NICD, Notch signalling, potential inhibitor, ZINC01690699 |
Abstract | Activation of Notch signalling pathway is triggered by binding of NICD to transcription factor CSL and transcriptional co-activator MAML, which involves in various biological functions as well as progression of diseases. Recent prediction shows suppression of cancer causing genes of this pathway through inhibition of NICD-MAML interaction. Through virtual screening against ``NCI Diversity 3'' of Zinc database, we identified a potential inhibitor ``ZINC01690699'' (1-N,4-N-bis[3-(1H-benzimidazol-2-yl)phenyl]benzene-1,4-dicarboxamide; 1-N, 4-dicarboxamide) possessing highest binding affinity to block the two distinct Binding Sites of NICD to inhibit NICD-MAML interaction and also found the most imperative and essential Binding Site (Site I). Inhibition of this interaction caused by binding of ZINC01690699 is validated by protein-protein docking and the prolonged binding as well as stability of NICD-Inhibitor complex is supported by molecular dynamics simulation. The study not only identifies the best inhibitor but also proposes a potential drug for the treatment of cancers. |
DOI | 10.2174/1570180812666150819003634 |
Type of Journal (Indian or Foreign) | Foreign |
Impact Factor (IF) | 0.974 |