Slow motion protein dance visualized using red-edge excitation shift of a buried fluorophore
Title | Slow motion protein dance visualized using red-edge excitation shift of a buried fluorophore |
Publication Type | Journal Article |
Year of Publication | 2019 |
Authors | Mishra, P, Jha, SKumar |
Journal | Journal of Physical Chemistry B |
Volume | 123 |
Issue | 6 |
Pagination | 1256-1264 |
Date Published | FEB |
Type of Article | Article |
ISSN | 1520-6106 |
Abstract | It has been extremely challenging to detect protein structures with a dynamic core, such as dry molten globules, that remain in equilibrium with the tightly packed native (N) state and that are important for a myriad of entropy-driven protein functions. Here, we detect the higher entropy conformations of a human serum protein, using red-edge excitation shift experiments. We covalently introduced a fluorophore inside the protein core and observed that in a subset of native population, the side chains of the polar and buried residues have different spatial arrangements than the mean population and that they solvate the fluorophore on a timescale much slower than the nanosecond timescale of fluorescence. Our results provide direct evidence for the dense fluidity of protein core and show that alternate side-chain packing arrangements exist in the core that might be important for multiple binding functions of this protein. |
DOI | 10.1021/acs.jpcb.8b11151 |
Type of Journal (Indian or Foreign) | Foreign |
Impact Factor (IF) | 2.923 |
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