Slow motion protein dance visualized using red-edge excitation shift of a buried fluorophore

TitleSlow motion protein dance visualized using red-edge excitation shift of a buried fluorophore
Publication TypeJournal Article
Year of Publication2019
AuthorsMishra, P, Jha, SKumar
JournalJournal of Physical Chemistry B
Volume123
Issue6
Pagination1256-1264
Date PublishedFEB
Type of ArticleArticle
ISSN1520-6106
Abstract

It has been extremely challenging to detect protein structures with a dynamic core, such as dry molten globules, that remain in equilibrium with the tightly packed native (N) state and that are important for a myriad of entropy-driven protein functions. Here, we detect the higher entropy conformations of a human serum protein, using red-edge excitation shift experiments. We covalently introduced a fluorophore inside the protein core and observed that in a subset of native population, the side chains of the polar and buried residues have different spatial arrangements than the mean population and that they solvate the fluorophore on a timescale much slower than the nanosecond timescale of fluorescence. Our results provide direct evidence for the dense fluidity of protein core and show that alternate side-chain packing arrangements exist in the core that might be important for multiple binding functions of this protein.

DOI10.1021/acs.jpcb.8b11151
Type of Journal (Indian or Foreign)

Foreign

Impact Factor (IF)

2.923

Divison category: 
Physical and Materials Chemistry

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