Repurposing small molecules of Tephrosia purpurea against SARS-CoV-2 main protease

TitleRepurposing small molecules of Tephrosia purpurea against SARS-CoV-2 main protease
Publication TypeJournal Article
Year of Publication2023
AuthorsSahoo, R, Sahu, P, Swargam, S, Kumari, I, Behera, B
JournalJournal of Biomolecular Structure and Dynamics
Volume41
Issue14
Pagination6822-6833
Date PublishedSEP
Type of ArticleArticle
ISSN0739-1102
Keywordsmolecular dynamics, SARS-CoV-2, Tephrosia purpurea
Abstract

Coronavirus infection is a communicable disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) which emerged as a global pandemic with deteriorating effect on the world's population. Main protease (M-pro) of SARS-CoV-2 plays a significant role in the viral replication, transcription and disease propagation as well as a potential candidate for drug discovery and development for COVID-19 infection. The current study employed state of art structure-based drug discovery to decipher the role of phytochemicals of Tephrosia purpurea against M-pro. Tephrosia purpurea is being used as a traditional medicinal plant for the treatment of cough, breathlessness and fever as per the Indian Materia Medica. Screening of the phytochemicals of Tephrosia purpurea against M-pro was performed using molecular docking approach to identify the top 5 hits (+)-tephrorin B, deguelin, vitamin p, lanceolarin and 3beta-hydroxy-20(29)-lupene with binding energy of -8.4, -8.1, -8.0, -7.8, and -7.8 kcal/mol, respectively. Furthermore, identified top 5 hits were subjected to drug-likeness and toxicity prediction as well as MM-GBSA calculation. Out of the five molecules four molecules were predicted not to comprise any mutagenic and carcinogenic effects. Top two molecules based on the drug-likeness properties for oral bio-availability were further analysed by molecular dynamics simulation at 100 ns timescale. It was observed from the dynamic behaviour of the two complexes that the addition of these molecules changed the conformation and stability of the apo protein; thus may act as inhibitors for M-pro. Communicated by Ramaswamy H. Sarma

DOI10.1080/07391102.2022.2112616
Type of Journal (Indian or Foreign)

Foreign

Impact Factor (IF)

4.4

Divison category: 
Biochemical Sciences
Database: 
Web of Science (WoS)

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