Molecular recognition pattern of cytotoxic alkaloid vinblastine with multiple targets

TitleMolecular recognition pattern of cytotoxic alkaloid vinblastine with multiple targets
Publication TypeJournal Article
Year of Publication2014
AuthorsPandya, P, Agarwal, LKr, Gupta, N, Pal, S
JournalJournal of Molecular Graphics & Modelling
Volume54
Pagination1-9
Date PublishedNOV
ISSN1093-3263
KeywordsDrug-DNA interactions, Drug-protein binding, Human serum albumin, Molecular docking, Multitarget affinity, QM-MM calculation, Vinblastine
Abstract

Vinblastine (VLB), a cytotoxic alkaloid is used extensively against various cancer types and the crystal structure of its tubulin complex is already known. Multitarget affinity of vinblastine has been investigated and the nature of binding with biological receptors namely, duplex DNA and Human serum albumin (HSA) has been compared to the binding characteristics of its known complex with natural high affinity receptor tubulin using molecular docking and QM-MM calculations. VLB is found to interact with DNA as well as HSA protein, though, with weaker affinity as compared to tubulin. Analysis of various docked complexes revealed that the H-bonds and cation-pi bonds do not have significant contribution to the binding interactions and despite its large size, VLB remains in relaxed conformation and fits in the hydrophobic regions on the receptors. (C) 2014 Elsevier Inc. All rights reserved.

DOI10.1016/j.jmgm.2014.09.001
Type of Journal (Indian or Foreign)Foreign
Impact Factor (IF)2.22
Divison category: 
Physical and Materials Chemistry