Molecular determinant for specificity: differential interaction of alpha-amylases with their proteinaceous inhibitors

TitleMolecular determinant for specificity: differential interaction of alpha-amylases with their proteinaceous inhibitors
Publication TypeJournal Article
Year of Publication2020
AuthorsRane, AS, Joshi, RS, Giri, AP
JournalBiochimica Et Biophysica Acta-General Subjects
Volume1864
Issue12
Pagination129703
Date PublishedDEC
Type of ArticleReview
ISSN0304-4165
KeywordsActive site, alpha-amylase, alpha-amylase inhibitor, Insect, molecular interactions
Abstract

Background: alpha-Amylase inhibitors (alpha-AIs) belong to the discrete classes, and exhibited differential specificities against alpha-amylases from various sources. Several alpha-amylases and their complexes with inhibitors at the molecular level have been studied in detail. Interestingly, some alpha-AIs depict specific and selective interactions amid different insect alpha-amylases. Scope of review: There are studies to understand evolutionary variability and functional differentiation of insect alpha-amylases and their cognate inhibitors. We have examined sequence, structural, and interaction diversity between various alpha-amylases and alpha-AIs. Based on these analyses, we are providing a potential basis for the functional differentiation among certain insect a-amylases concerning mammalian counterparts and their interactions with different proteinaceous alpha-AIs. Major conclusions: Insect alpha-amylases have conserved domain architecture with differences in length, number of disulfide bonds, and secondary structure. Furthermore, few of them exhibit variable characteristics like chloride dependent activity, the presence of N-terminal glutamine residue to protect against proteolytic degradation, and loop variations near the enzyme active site. Conformation of alpha-AI protein could be an essential factor for their specificity and binding affinities towards target alpha-amylase(s). Furthermore, variation into the enzyme binding pocket residues might contribute to differential interactions with inhibitors. General significance: Molecular insights in the interactions between insect alpha-amylases and plant alpha-AI will provide the details of mechanisms assisting the inhibitor specificity. Furthermore, this information will help to design potent and effective alpha-AIs against specific alpha-amylase.

DOI10.1016/j.bbagen.2020.129703
Type of Journal (Indian or Foreign)

Foreign

Impact Factor (IF)

3.422

Divison category: 
Biochemical Sciences

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