Method for identification of sensitive nodes in boolean models of biological networks

TitleMethod for identification of sensitive nodes in boolean models of biological networks
Publication TypeJournal Article
Year of Publication2018
AuthorsDnyane, PA, Puntambekar, SS, Gadgil, CJ
JournalIET Systems Biology
Volume12
Issue1
Pagination1-6
Date PublishedFEB
Type of ArticleArticle
ISSN1751-8849
Keywordsbiological networks, Boolean functions, Boolean models, fly segment polarity network, human melanogenesis signalling network, perturbation methods, Perturbation theory, physiological models
Abstract

Biological systems are often represented as Boolean networks and analysed to identify sensitive nodes which on perturbation disproportionately change a predefined output. There exist different kinds of perturbation methods: perturbation of function, perturbation of state and perturbation in update scheme. Nodes may have defects in interpretation of the inputs from other nodes and calculation of the node output. To simulate these defects and systematically assess their effect on the system output, two new function perturbations, referred to as not of function' and function of not', are introduced. In the former, the inputs are assumed to be correctly interpreted but the output of the update rule is perturbed; and in the latter, each input is perturbed but the correct update rule is applied. These and previously used perturbation methods were applied to two existing Boolean models, namely the human melanogenesis signalling network and the fly segment polarity network. Through mathematical simulations, it was found that these methods successfully identified nodes earlier found to be sensitive using other methods, and were also able to identify sensitive nodes which were previously unreported.

DOI10.1049/iet-syb.2017.0039
Type of Journal (Indian or Foreign)Foreign
Impact Factor (IF)1.048
Divison category: 
Chemical Engineering & Process Development

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