Boolean model for melanogenesis

TitleBoolean model for melanogenesis
Publication TypeJournal Article
Year of Publication2021
AuthorsDnyane, P, Gadgil, C
JournalPhysical Biology
Volume18
Issue2
Pagination026004
Date PublishedMAR
Type of ArticleArticle
ISSN1478-3967
KeywordsBoolean model, melanogenesis, Signal transduction
Abstract

Melanogenesis is a highly regulated process through which the pigment melanin is produced in skin cells. Irregularities in the molecular events that govern the process of skin pigmentation can cause disorders like vitiligo. In order to understand the biology of disease progression, it is important to have an in depth understanding of intracellular events. Mathematical models provide an integrated view of intracellular signalling. There are very few models to date that incorporate intracellular processes relevant to melanogenesis and only one to our knowledge that simulates the dynamics of response to varying levels of input. Here, we report the formulation of the largest Boolean model (265 nodes) for melanogenesis to date. The model was built on the basis of a detailed interaction network graph published by Raghunath et al. Through additional manual curation of the reported interactions, we converted the graph into a set of Boolean rules, following the procedure of the first Boolean model (62 nodes) for melanogenesis published by Lee et al. Simulations show that the predicted response to varying UV levels for most of the nodes is similar to the predictions of the existing model. The greater complexity allows investigation of the sensitivity of melanin to additional nodes. We carried out perturbation analysis of the network through node deletion and constitutive activation to identify sensitivity of outcomes, and compared the nodes identified as sensitive to previous reports.

DOI10.1088/1478-3975/abd3dd
Type of Journal (Indian or Foreign)

Foreign

Impact Factor (IF)2.583
Divison category: 
Chemical Engineering & Process Development

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