Assessing therapeutic potential of molecules: molecular property diagnostic suite for tuberculosis

TitleAssessing therapeutic potential of molecules: molecular property diagnostic suite for tuberculosis
Publication TypeJournal Article
Year of Publication2017
AuthorsGaur, AS, Bhardwaj, A, Sharma, A, John, L, Vivek, MR, Tripathi, N, Bharatam, PV, Kumar, R, Janardhan, S, Mori, A, Banerji, A, Lynn, AM, Hemrom, AJ, Passi, A, Singh, A, Kumar, A, Muvva, C, Madhuri, C, Choudhury, C, Kumar, DA, Pandit, D, Bharti, DR, Kumar, D, Singam, EA, Raghava, GP, Sailaja, H, Jangra, H, Raithatha, K, Tanneeru, K, Chaudhary, K, Karthikeyan, M, Prasanthi, M, Kumar, N, Yedukondalu, N, Rajput, NK, Saranya, PS, Narang, P, Dutta, P, Krishnan, R
JournalJournal of Chemical Sciences
Volume129
Issue5
Pagination515-531
Date PublishedMAY
Type of ArticleArticle
ISSN0974-3626
Keywordschemical analysis, Chemoinformatics, computational chemistry, Diagnosis, Drug discovery portal, Information analysis, Libraries, Molecular graphics, Molecules, Neglected diseases, Open science, Portals, tuberculosis, Web-based technology, Websites
Abstract

Abstract: Molecular Property Diagnostic Suite (MPDS TB) is a web tool (http://mpds.osdd.net) designed to assist the in silico drug discovery attempts towards Mycobacterium tuberculosis (Mtb). MPDS TB tool has nine modules which are classified into data library (1–3), data processing (4–5) and data analysis (6–9). Module 1 is a repository of literature and related information available on the Mtb. Module 2 deals with the protein target analysis of the chosen disease area. Module 3 is the compound library consisting of 110.31 million unique molecules generated from public domain databases and custom designed search tools. Module 4 contains tools for chemical file format conversions and 2D to 3D coordinate conversions. Module 5 helps in calculating the molecular descriptors. Module 6 specifically handles QSAR model development tools using descriptors generated in the Module 5. Module 7 integrates the AutoDock Vina algorithm for docking, while module 8 provides screening filters. Module 9 provides the necessary visualization tools for both small and large molecules. The workflow-based open source web portal, MPDS TB 1.0.1 can be a potential enabler for scientists engaged in drug discovery in general and in anti-TB research in particular. Graphical Abstract: SYNOPSIS: A web-based MPDS TB Galaxy tool is developed for assessing therapeutic potential of molecules. MPDS TB is categorized into Data Library, Data Processing and Data Analysis. It can be a potential enabler for scientists engaged in drug discovery in general and in anti-TB research in particular. [Figure not available: see fulltext.] © 2017, Indian Academy of Sciences.

DOI10.1007/s12039-017-1268-4
Type of Journal (Indian or Foreign)Indian
Impact Factor (IF)1.254
Divison category: 
Chemical Engineering & Process Development

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