Aminomethylene peptide nucleic acid (am-PNA): synthesis, regio-/stereospecific DNA binding, and differential cell uptake of (alpha/gamma,R/S)am-PNA analogues
Title | Aminomethylene peptide nucleic acid (am-PNA): synthesis, regio-/stereospecific DNA binding, and differential cell uptake of (alpha/gamma,R/S)am-PNA analogues |
Publication Type | Journal Article |
Year of Publication | 2012 |
Authors | Mitra, R, Ganesh, KN |
Journal | Journal of Organic Chemistry |
Volume | 77 |
Issue | 13 |
Pagination | 5696-5704 |
Date Published | JUL |
ISSN | 0022-3263 |
Abstract | Inherently chiral, cationic am-PNAs having pendant aminomethylene groups at alpha(R/S) or gamma(S) sites on PNA backbone have been synthesized. The modified PNAs are shown to stabilize duplexes with complementary cDNA in a regio- and stereo-preferred manner with gamma(S)-am PNA superior to alpha(R/S)-am PNAs and alpha(R)-am PNA better than the alpha(S) isomer. The enhanced stabilization of am-PNA:DNA duplexes is accompanied by a greater discrimination of mismatched bases. This seems to be a combined result of both electrostatic interactions and conformational preorganization of backbone favoring the cDNA binding. The am-PNAs are demonstrated to effectively traverse the cell membrane, localize in the nucleus of He La cells, and exhibit low toxicity to cells. |
DOI | 10.1021/jo300860f |
Type of Journal (Indian or Foreign) | Foreign |
Impact Factor (IF) | 4.564 |