R. S.  Coyne, Hannick, L., Shanmugam, D., Hostetler, J. B., Brami, D., Joardar, V. S., Johnson, J., Radune, D., Singh, I., Badger, J. H., Kumar, U., Saier, M., Wang, Y., Cai, H., Gu, J., Mather, M. W., Vaidya, A. B., Wilkes, D. E., Rajagopalan, V., Asai, D. J., Pearson, C. G., Findly, R. C., Dickerson, H. W., Wu, M., Martens, C., Van de Peer, Y., Roos, D. S., Cassidy-Hanley, D. M., and Clark, T. G., ?Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control?, Genome Biology, vol. 12, no. 10, p. Article Number: R100, 2011.

A. James Reid, Vermont, S. J., Cotton, J. A., Harris, D., Hill-Cawthorne, G. A., Koenen-Waisman, S., Latham, S. M., Mourier, T., Norton, R., Quail, M. A., Sanders, M., Shanmugam, D., Sohal, A., Wasmuth, J. D., Brunk, B., Grigg, M. E., Howard, J. C., Parkinson, J., Roos, D. S., Trees, A. J., Berriman, M., Pain, A., and Wastling, J. M., ?Comparative genomics of the apicomplexan parasites toxoplasma gondii and neospora caninum: coccidia differing in host range and transmission strategy?, Plos Pathogens, vol. 8, no. 3, 2012.

M. P.  Magarinos, Carmona, S. J., Crowther, G. J., Ralph, S. A., Roos, D. S., Shanmugam, D., and Van Voorhis, W. C., ?TDR Targets: a chemogenomics resource for neglected diseases?, Nucleic Acids Research, vol. 40, no. D1, pp. D1118-D1127, 2012.

Y. H.  Woo, Ansari, H., Otto, T. D., Klinger, C. M., Kolisko, M., Michalek, J., Saxena, A., Shanmugam, D., Tayyrov, A., Veluchamy, A., Ali, S., Bernal, A., del Campo, J., Cihlar, J., Flegontov, P., Gornik, S. G., Hajduskova, E., Horak, A., Janouskovec, J., Katris, N. J., Mast, F. D., Miranda-Saavedra, D., Mourier, T., Naeem, R., Nair, M., Panigrahi, A. K., Rawlings, N. D., Padron-Regalado, E., Ramaprasad, A., Samad, N., Tomcala, A., Wilkes, J., Neafsey, D. E., Doerig, C., Bowler, C., Keeling, P. J., Roos, D. S., Dacks, J. B., Templeton, T. J., Waller, R. F., Lukes, J., Obornik, M., and Pain, A., ?Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites?, Elife, vol. 4, p. Article Number: e06974, 2015.

J. D.  Lykins, Filippova, E. V., Halavaty, A. S., Minasov, G., Zhou, Y., Dubrovska, I., Flores, K. J., Shuvalova, L. A., Ruan, J., Bissati, K. El, Dovgin, S., Roberts, C. W., Woods, S., Moulton, J. D., Moulton, H., Mcphillie, M. J., Muench, S. P., Fishwick, C. W. G., Sabini, E., Shanmugam, D., Roos, D. S., Mcleod, R., Anderson, W. F., and Ngo, H. M., ?CSGID solves structures and identifies phenotypes for five enzymes in toxoplasma gondii?, Frontiers in Cellular and Infection Microbiology, vol. 8, 2018.

A.  Shukla, Olszewski, K. L., Llinas, M., Rommereim, L. M., Fox, B. A., Bzik, D. J., Xia, D., Wastling, J., Beiting, D., Roos, D. S., and Shanmugam, D., ? Glycolysis is important for optimal asexual growth and formation of mature tissue cysts by Toxoplasma gondii?, International Journal for Parasitology , vol. 48, no. 12, pp. 955-968, 2018.