V. C.  Pardeshi, Kadoo, N. Y., Sainani, M. N., Meadows, J. R. S., Kijas, J. W., and Gupta, V. S., ?Mitochondrial haplotypes reveal a strong genetic structure for three Indian sheep breeds?, Animal Genetics, vol. 38, no. 5, pp. 460-466, 2007.

S. J. M.  Gowda, Radhika, P., Kadoo, N. Y., Mhase, L. B., and Gupta, V. S., ?Molecular mapping of wilt resistance genes in chickpea?, Molecular Breeding, vol. 24, no. 2, pp. 177-183, 2009.

P.  Ramya, Chaubal, A., Kulkarni, K., Gupta, L., Kadoo, N. Y., Dhaliwal, H. Singh, Chhuneja, P., Lagu, M. D., and Gupta, V., ?QTL mapping of 1000-kernel weight, kernel length, and kernel width in bread wheat (Triticum aestivum L.)?, Journal of Applied Genetics, vol. 51, no. 4, pp. 421-429, 2010.

A. V.  Rajwade, Arora, R. S., Kadoo, N. Y., Harsulkar, A. M., Ghorpade, P. B., and Gupta, V. S., ?Relatedness of Indian flax genotypes (Linum usitatissimum L.): an inter-simple sequence repeat (ISSR) primer assay?, Molecular Biotechnology, vol. 45, no. 2, pp. 161-170, 2010.

S.  Banu, Bhagwat, R. M., Kadoo, N. Y., Lagu, M. D., and Gupta, V. S., ?Understanding the genetic structure of symplocos laurina wall. populations using nuclear gene markers?, Genetica, vol. 138, no. 2, pp. 197-210, 2010.

B. N.  Kidd, Kadoo, N. Y., Dombrecht, B., Tekeoglu, M., Gardiner, D. M., Thatcher, L. F., Aitken, E. A. B., Schenk, P. M., Manners, J. M., and Kazan, K., ?Auxin signaling and transport promote susceptibility to the root-infecting fungal pathogen fusarium oxysporum in arabidopsis?, Molecular Plant-Microbe Interactions, vol. 24, no. 6, pp. 733-748, 2011.

S. J. M.  Gowda, Radhika, P., Mhase, L. B., Jamadagni, B. M., Gupta, V. S., and Kadoo, N. Y., ?Mapping of QTLs governing agronomic and yield traits in chickpea?, Journal of Applied Genetics, vol. 52, no. 1, pp. 9-21, 2011.

S. M.  Kale, Pardeshi, V. C., Kadoo, N. Y., Ghorpade, P. B., Jana, M. M., and Gupta, V. S., ?Development of genomic simple sequence repeat markers for linseed using next-generation sequencing technology?, Molecular Breeding, vol. 30, no. 1, pp. 597-606, 2012.

R.  Prashant, Kadoo, N. Y., Desale, C., Kore, P., Dhaliwal, H. Singh, Chhuneja, P., and Gupta, V., ?Kernel morphometric traits in hexaploid wheat (Triticum aestivum L.) are modulated by intricate QTL x QTL and genotype x environment interactions?, Journal of Cereal Science, vol. 56, no. 2, pp. 432-439, 2012.

V. T.  Barvkar, Pardeshi, V. C., Kale, S. M., Kadoo, N. Y., and Gupta, V. S., ?Phylogenomic analysis of UDP glycosyltransferase 1 multigene family in Linum usitatissimum identified genes with varied expression patterns?, BMC Genomics, vol. 13, p. 175, 2012.

V. T.  Barvkar, Pardeshi, V. C., Kale, S. M., Kadoo, N. Y., Giri, A. P., and Gupta, V. S., ?Proteome profiling of flax (linum usitatissimum) seed: characterization of functional metabolic pathways operating during seed development?, Journal of Proteome Research, vol. 11, no. 12, pp. 6264-6276, 2012.

V. T.  Barvkar, Pardeshi, V. C., Kale, S. M., Qiu, S., Rollins, M., Datla, R., Gupta, V. S., and Kadoo, N. Y., ?Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum)?, Planta, vol. 237, no. 4, pp. 1149-1161, 2013.

S. M.  Kale, Pardeshi, V. C., Barvkar, V. T., Gupta, V. S., and Kadoo, N. Y., ?Genome-wide identification and characterization of nucleotide binding site leucine-rich repeat genes in linseed reveal distinct patterns of gene structure?, Genome, vol. 56, no. 2, pp. 91-99, 2013.

A. V.  Rajwade, Kadoo, N. Y., Borikar, S. P., Harsulkar, A. M., Ghorpade, P. B., and Gupta, V. S., ?Differential transcriptional activity of SAD, FAD2 and FAD3 desaturase genes in developing seeds of linseed contributes to varietal variation in alpha-linolenic acid content?, Phytochemistry, vol. 98, pp. 41-53, 2014.

R. M.  Bhagwat, Banu, S., Dholakia, B. B., Kadoo, N. Y., Lagu, M. D., and Gupta, V. S., ?Evaluation of genetic variability in Symplocos laurina Wall. from two biodiversity hotspots of India?, Plant Systematics and Evolution, vol. 300, no. 10, pp. 2239-2247, 2014.

S.  Banu, Baruah, D., Bhagwat, R. M., Sarkar, P., Bhowmick, A., and Kadoo, N. Y., ?Analysis of genetic variability in Aquilaria malaccensis from Bramhaputra valley, Assam, India using ISSR markers?, Flora, vol. 217, pp. 24-32, 2015.

A.  Upadhyay, Jogaiah, S., Maske, S. R., Kadoo, N. Y., and Gupta, V. S., ?Expression of stable reference genes and SPINDLY gene in response to gibberellic acid application at different stages of grapevine development?, Biologia Plantarum, vol. 59, no. 3, pp. 436-444, 2015.

R.  Prashant, Mani, E., Rai, R., Gupta, R. K., Tiwari, R., Dholakia, B. B., Oak, M., Roeder, M., Kadoo, N. Y., and Gupta, V., ?Genotype x environment interactions and QTL clusters underlying dough rheology traits in triticum aestivum L.?, Journal of Cereal Science, vol. 64, pp. 82-91, 2015.

Y.  Kumar, Dholakia, B. B., Panigrahi, P., Kadoo, N. Y., Giri, A. P., and Gupta, V. S., ?Metabolic profiling of chickpea-Fusarium interaction identifies differential modulation of disease resistance pathways?, Phytochemistry, vol. 116, pp. 120-129, 2015.

R. M.  Bhagwat, Dholakia, B. B., Kadoo, N. Y., Balasundaran, M., and Gupta, V. S., ?Two new potential barcodes to discriminate dalbergia species?, Plos One, vol. 10, no. 11, p. Article Number: e0142965, 2015.

E. Ahmad Siddiqui, Ahmad, A., Julius, A., Syed, A., Khan, S., Kharat, M., Pai, K., Kadoo, N. Y., and Gupta, V., ?Biosynthesis of anti-proliferative gold using endophytic fusarium oxysporum strain isolated from neem (A-indica) leaves?, Current topics in medicinal chemistry, vol. 16, no. 18, pp. 2036-2042, 2016.

M. L.  Upasani, Gurjar, G. S., Kadoo, N. Y., and Gupta, V. S., ?Dynamics of colonization and expression of pathogenicity related genes in fusarium oxysporum f.sp ciceri during chickpea vascular wilt disease progression?, Plos One, vol. 11, no. 5, p. Article Number: e0156490, 2016.

Y.  Kumar, Zhang, L., Panigrahi, P., Dholakia, B. B., Dewangan, V., Chavan, S. G., Kunjir, S. M., Wu, X., Li, N., Rajmohanan, P. R., Kadoo, N. Y., Giri, A. P., Tang, H., and Gupta, V. S., ?Fusarium oxysporum mediates systems metabolic reprogramming of chickpea roots as revealed by a combination of proteomics and metabolomics?, Plant Biotechnology Journal, vol. 14, no. 7, pp. 1589-1603, 2016.

A. V.  Rajwade, Joshi, R. S., Kadoo, N. Y., and Gupta, V. S., ?Sequence characterization and in silico structure prediction of fatty acid desaturases in linseed varieties with differential fatty acid composition?, Journal of the Science of Food and Agriculture, vol. 96, no. 15, pp. 4896-4906, 2016.

M. L.  Upasani, Limaye, B. M., Gurjar, G. S., Kasibhatla, S. M., Joshi, R. R., Kadoo, N. Y., and Gupta, V. S., ?Chickpea-fusarium oxysporum interaction transcriptome reveals differential modulation of plant defense strategies?, Scientific Reports, vol. 7, no. Article Number: 7746, 2017.

A. B.  Deshpande, Anamika, K., Jha, V., Chidley, H. G., Oak, P. S., Kadoo, N. Y., Pujari, K. H., Giri, A. P., and Gupta, V. S., ?Transcriptional transitions in alphonso mango (Mangifera indica L.) during fruit development and ripening explain its distinct aroma and shelf life characteristics?, Scientific Reports, vol. 7, no. Article Number: 8711, 2017.

A.  Upadhyay, Maske, S., Jogaiah, S., Kadoo, N. Y., and Gupta, V. S., ?GA3 application in grapes (Vitis vinifera L.) modulates different sets of genes at cluster emergence, full bloom, and berry stage as revealed by RNA sequence-based transcriptome analysis?, Functional & Integrative Genomics, vol. 18, no. 4, pp. 439?455, 2018.

S. S.  Patil, Prashant, R., Kadoo, N. Y., Upadhyay, A., and Gupta, V. S., ?Global study of MFS superfamily transporters in arabidopsis and grapes reveals their functional diversity in plants?, Plant Gene, vol. 18, 2019.

D.  Rashmi, Barvkar, V. T., Nadaf, A., Mundhe, S., and Kadoo, N. Y., ?Integrative omics analysis in Pandanus odorifer (Forssk.) Kuntze reveals the role of Asparagine synthetase in salinity tolerance?, Scientific Reports, vol. 9, p. Article Number: 932, 2019.

D.  Somani, Adhav, R., Prashant, R., and Kadoo, N. Y., ?Transcriptomics analysis of propiconazole-treated Cochliobolus sativus reveals new putative azole targets in the plant pathogen?, Functional & Integrative Genomics, vol. 19, no. 3, pp. 453-465, 2019.

S.  Maske, Upadhyay, A., Jogaiha, S., Patil, S. S., Kadoo, N. Y., and Gupta, V. S., ?Whole proteome analysis of GA(3) response at panicle stage in Grape (Vitis vinifera) CV. Thompson seedless?, Journal of Plant Growth Regulation, 2019.

G. M.  Pathak, Gurjar, G. S., and Kadoo, N. Y., ?Insights of Bipolaris sorokinianasecretome-anin silicoapproach?, Biologia, vol. 75, no. 12, pp. 2367-2381, 2020.

U.  Jadhav, Mundhe, S., Kumar, Y., Jogaiah, S., Upadhyay, A., Gupta, V. S., and Kadoo, N. Y., ?Gibberellic acid induces unique molecular responses in ?thompson seedless? grapes as revealed by non-targeted metabolomics?, Journal of Plant Growth Regulation, vol. 40, no. 1, pp. 293 - 304, 2021.

U.  Jadhav, Mundhe, S., Kumar, Y., Jogaiah, S., Upadhyay, A., Gupta, V. S., and Kadoo, N. Y., ?Gibberellic acid induces unique molecular responses in `thompson seedless' grapes as revealed by non-targeted metabolomics?, Journal of Plant Growth Regulation, vol. 40, no. 1, pp. 293-304, 2021.

Y. A.  Mahajan, Shinde, B. A., Mulani, F. A., Gade, A. B., Kasodekar, A. K., Thulasiram, H. V., Kadoo, N. Y., and Nikam, T. D., ?Diversity assessment of Gloriosa superba accessions from Western Ghats of India based on morphological traits, ISSR markers and metabolite content?, Journal of Applied Research on Medicinal and Aromatic Plants, vol. 30, p. 100388, 2022.

D.  Rashmi, Ansari, W. A., Kadoo, N. Y., Barvkar, V. T., Deshmukh, R., and Nadaf, A. B., ?Role of ions and their transporters in combating salt stress in Pandanus odorifer (Forssk.) Kuntze?, Acta Physiologiae Plantarum, vol. 45, no. 5, p. 66, 2023.

V. H.  Salunkhe, Kunte, P. S., Paul, D., Kasodekar, A. K., and Kadoo, N. Y., ?Seasonal dynamics and tree foliar habit drive the rhizobacterial diversity in congeneric Ficus species from Northern Western Ghats, India?, Rhizosphere, vol. 28, p. 100790, 2023.

Y. A.  Mahajan, Shinde, B. A., Shirke, H. A., Gandra, J., Suravajhala, P., Kishor, P. B. Kavi, Kadoo, N. Y., and Nikam, T. D., ?Unlocking the genetic and biotechnological potential of Gloriosa superba to enhance its alkaloid production?, Industrial Crops and Products, vol. 211, p. 118144, 2024.

D.  Rashmi, Barvkar, V. T., Nadaf, A. B., and Kadoo, N. Y., ?Harnessing microRNAs and their targets for salt stress tolerance in Pandanus odorifer?, Journal of Plant Biochemistry and Biotechnology, vol. 34, no. 3, pp. 714-730, 2025.

R.  Sahoo and Kadoo, N. Y., ?Integrative multi-omics and computer-aided biofungicide design approach to combat fusarium wilt of chickpea?, Planta, vol. 262, no. 5, p. 107, 2025.

B. R.  Dayama, Mahadik, V. A., Somani, D., Shinde, B. A., Kondhare, K. R., Karthikeyan, M., and Kadoo, N. Y., ?Transcriptome analyses reveal TaWRKY41 as a potential candidate governing spot blotch resistance in wheat?, Physiology and Molecular Biology of Plants, vol. 31, no. 4, pp. 591-608, 2025.