02298nas a2200325   4500008004100000022001400041245010500055210006900160260000800229300001400237490000700251520126500258653001201523653002601535653001401561653002101575653003001596653002201626100002001648700002101668700002101689700001701710700001901727700002001746700001901766700002101785700001601806700001901822856013101841       2022                        eng d  a2001-037000aSNP discovery and structural insights into OeFAD2 unravelling high oleic/linoleic ratio in olive oil0 aSNP discovery and structural insights into OeFAD2 unravelling hi  cJUL  a1229-12430 v203 a<p>
	Fatty Acid Desaturase 2 (FAD2), a key enzyme in the fatty acid biosynthesis pathway, is involved in the desaturation and conversion of oleic acid to linoleic acid. Therefore, it plays a crucial role in oleic/linoleic acid ratio and the quality of olive oil. DNA sequencing of 19 FAD2 genes from a set of olive oil varieties revealed several single-nucleotide polymorphisms (SNPs) and highlighted associations between some of the SNPs and saturated fatty acids contents. This was further confirmed by SNP-interaction and machine learning approach. Haplotype diversity analysis led to the discovery of three highly polymorphic SNPs and four haplotypes harboring differential oleic/linoleic acid ratios. Moreover, a combination of molecular modeling and docking experiments allowed a deeper and better understanding of the structure-function relationship of the FAD2 enzyme. Sequence patterns and variations involved in the regulation of the FAD2 activity were also identified. Furthermore, S82C and H213N substitutions in OeFAD2 make the Oueslati variety more interesting in terms of fatty acid profile and oleic acid level. (C) 2022 The Authors. Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology.</p>
10adocking10aFatty acid desaturase10aHaplotype10amachine learning10aOleic/linoleic acid ratio10aProtein structure1 aBen Ayed, Rayda1 aMoreau, Fabienne1 aBen Hlima, Hajer1 aRebai, Ahmed1 aErcisli, Sezai1 aKadoo, Narendra1 aHanana, Mohsen1 aAssouguem, Amine1 aUllah, Riaz1 aAli, Essam, A.  uhttps://library.ncl.res.in/content/snp-discovery-and-structural-insights-oefad2-unravelling-high-oleiclinoleic-ratio-olive-oil02591nas a2200277   4500008004100000022001400041245006900055210006900124260000800193300001200201490000800213520175800221653002501979653000902004653000902013653002602022653002802048653001802076100002102094700001802115700002102133700002202154700002502176700002002201856009202221       2025                        eng d  a0003-021X00aMolecular insights into the oleic acid accumulation in safflower0 aMolecular insights into the oleic acid accumulation in safflower  cFEB  a351-3630 v1023 a<p>
	Most of the Indian safflower (Carthamus tinctorius L.) varieties produce oil rich in linoleic acid (LA, similar to 75%) and low in oleic acid (OA, similar to 15%). In the fatty acid biosynthetic pathway, the fatty acid desaturase 2 (FAD2) enzyme converts OA to LA. Safflower is reported to have 12-20 FAD2 genes. Gene expression analysis of four FAD2 genes during seed development in a high LA variety, PBNS-12, revealed high expression of FAD2-1 at 21 days after flowering (DAF), correlating with high LA accumulation. Fatty acid profiling of 448 Indian safflower germplasm accessions revealed four lines to have high (58%-77%) OA content, with NASF-39 having the highest OA content. Interestingly, all four high OA lines showed the same mutation in the FAD2-1 gene. The DNA sequence of FAD2-1 from the four high OA lines showed a deletion of C at the +606 position, resulting in a premature stop codon at the +733 position and a truncated protein of 244 amino acids. Hence, despite the high expression levels of FAD2-1 in NASF-39 at 18-21 DAF, it exhibited high OA (77%). The dysfunctional nature of the truncated FAD2-1 in NASF-39 was evident in molecular docking studies with 1-stearoyl-2-oleoyl phosphatidylcholine. We also sequenced FATB, a thioesterase responsible for releasing stearic acid from acyl carrier protein for further desaturation to oleic acid, where an A773G substitution was observed. This resulted in E258G substitution in NASF-39 FATB compared to that of PBNS-12. This probably made the acyl-binding pocket of NASF-39 FATB unstable, contributing to high OA accumulation. Thus, the outcomes of this study can help develop super and ultra-high oleic safflower varieties through various genetics and genomics approaches.</p>
10aCarthamus tinctorius10aFAD210aFATB10aFatty acid desaturase10afatty acid thioesterase10alinoleic acid1 aSalunke, Gayatri1 aBadhe, Yogesh1 aSingh, Vrijendra1 aGhorpade, Prakash1 aHegde, Mahabaleshwar1 aKadoo, Narendra  uhttps://library.ncl.res.in/content/molecular-insights-oleic-acid-accumulation-safflower