@article { ISI:000251868800001, title = {Versatile method for the preparation of conjugates of peptides with DNA/PNA/analog by employing chemo-selective click reaction in water}, journal = {Nucleic Acids Research}, volume = {35}, number = {21}, year = {2007}, month = {DEC}, pages = {e139}, publisher = {OXFORD UNIV PRESS}, type = {Article}, address = {GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND}, abstract = {

The specific 1,3 dipolar Hisgen cycloaddition reaction known as {\textquoteleft}click-reaction{\textquoteright} between azide and alkyne groups is employed for the synthesis of peptideoligonucleotide conjugates. The peptide nucleic acids (PNA)/DNA and peptides may be appended either by azide or alkyne groups. The cycloaddition reaction between the azide and alkyne appended substrates allows the synthesis of the desired conjugates in high purity and yields irrespective of the sequence and functional groups on either of the two substrates. The versatile approach could also be employed to generate the conjugates of peptides with thioacetamido nucleic acid (TANA) analog. The click reaction is catalyzed by Cu (I) in either water or in organic medium. In water, similar to 3-fold excess of the peptide-alkyne/azide drives the reaction to completion in 2 h with no side products.

}, issn = {0305-1048}, doi = {10.1093/nar/gkm935}, author = {Gogoi, Khirud and Mane, Meenakshi V. and Kunte, Sunita S. and Kumar, Vaijayanti A.} } @article { ISI:000252757100011, title = {Chimeric (alpha-amino acid plus nucleoside-beta-amino acid)(n) peptide oligomers show sequence specific DNA/RNA recognition}, journal = {Chemical Communications}, number = {6}, year = {2008}, month = {JAN}, pages = {706-708}, publisher = {ROYAL SOC CHEMISTRY}, type = {Article}, address = {THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS, ENGLAND}, abstract = {

An alpha/beta-peptide backbone oligonucleotide comprising natural alpha-amino acids alternating with a beta-amino acid component derived from thymidine sequence specifically recognizes and binds to deoxy- and ribo-oligoadenylates in triplex mode.

}, issn = {1359-7345}, doi = {10.1039/b716835g}, author = {Gogoi, Khirud and Kumar, Vaijayanti A.} } @article { ISI:000283531100049, title = {Probing binding preferences of DNA and RNA: backbone chirality of thioacetamido-linked nucleic acids and iso-thioacetamido-linked nucleic acids to differentiate DNA versus RNA selective binding}, journal = {Journal of Organic Chemistry}, volume = {75}, number = {21}, year = {2010}, month = {NOV}, pages = {7431-7434}, publisher = {AMER CHEMICAL SOC}, address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA}, abstract = {

Subtle differences in RNA and DNA duplex geometry could be sensed by the changed stereochemistry at 3 {\textquoteleft}-amino function in the 5-atom thioacetamido linker of thioacetamido-linked nucleic acids and iso-thioacetamido-linked nucleic acids modified oligomers. In contrast to the preferred N-type sugar conformations for either 3 {\textquoteleft}- ribo- or xylo amino nucleosides, predominant S-type sugar conformations were found in the dimers. Although the CD spectral differences for the dimer blocks were found to be identical for those found in phosphodiester linked ribo/xylo dimers, the 5-atom thioactamido linker could reverse the RNA binding selectivity to DNA binding selectivity by the change in configuration at the 3 {\textquoteleft}-amino-substituted sugar.

}, issn = {0022-3263}, doi = {10.1021/jo1014036}, author = {Gokhale, Sachin S. and Gogoi, Khirud and Kumar, Vaijayanti A.} }