@article { ISI:000207455800021,
	title = {Analysis of mitochondrial DNA sequences in childhood encephalomyopathies reveals new disease-associated variants},
	journal = {Plos One},
	volume = {2},
	number = {9},
	year = {2007},
	month = {SEP},
	pages = {e942},
	publisher = {PUBLIC LIBRARY SCIENCE},
	type = {Article},
	address = {185 BERRY ST, STE 1300, SAN FRANCISCO, CA 94107 USA},
	abstract = {<p>Background. Mitochondrial encephalomyopathies are a heterogeneous group of clinical disorders generally caused due to mutations in either mitochondrial DNA (mtDNA) or nuclear genes encoding oxidative phosphorylation (OXPHOS). We analyzed the mtDNA sequences from a group of 23 pediatric patients with clinical and morphological features of mitochondrial encephalopathies and tried to establish a relationship of identified variants with the disease. Methodology/Principle Findings. Complete mitochondrial genomes were amplified by PCR and sequenced by automated DNA sequencing. Sequencing data was analyzed by SeqScape software and also confirmed by BLASTn program. Nucleotide sequences were compared with the revised Cambridge reference sequence (CRS) and sequences present in mitochondrial databases. The data obtained shows that a number of known and novel mtDNA variants were associated with the disease. Most of the non-synonymous variants were heteroplasmic (A4136G, A9194G and T11916A) suggesting their possibility of being pathogenic in nature. Some of the missense variants although homoplasmic were showing changes in highly conserved amino acids (T3394C, T3866C, and G9804A) and were previously identified with diseased conditions. Similarly, two other variants found in tRNA genes (G5783A and C8309T) could alter the secondary structure of Cys-tRNA and Lys-tRNA. Most of the variants occurred in single cases; however, a few occurred in more than one case (e. g. G5783A and A10149T). Conclusions and Significance. The mtDNA variants identified in this study could be the possible cause of mitochondrial encephalomyopathies with childhood onset in the patient group. Our study further strengthens the pathogenic score of known variants previously reported as provisionally pathogenic in mitochondrial diseases. The novel variants found in the present study can be potential candidates for further investigations to establish the relationship between their incidence and role in expressing the disease phenotype. This study will be useful in genetic diagnosis and counseling of mitochondrial diseases in India as well as worldwide.</p>},
	issn = {1932-6203},
	doi = {10.1371/journal.pone.0000942},
	author = {Wani, Aijaz A. and Ahanger, Sajad H. and Bapat, Sharmila A. and Rangrez, Ashraf Y. and Hingankar, Nitin and Suresh, C. G. and Barnabas, Shama and Patole, Milind S. and Shouche, Yogesh S.}
}
@article { ISI:000323497900010,
	title = {Alishewanella solinquinati sp nov., isolated from soil contaminated with textile dyes},
	journal = {Current Microbiology},
	volume = {67},
	number = {4},
	year = {2013},
	month = {OCT},
	pages = {454-459},
	publisher = {SPRINGER},
	address = {233 SPRING ST, NEW YORK, NY 10013 USA},
	abstract = {<p>A novel Gram-negative, motile, rod-shaped, facultative anaerobic bacterial strain, KMK6(T), was isolated from soil contaminated with textile dyes from an industrial estate located at Ichalkaranji, Maharashtra, India, and its taxonomical position was established by using a polyphasic approach. The major cellular fatty acids included C-17:1 omega 8c, summed feature 3 (C-16:1 omega 7c and/or iso-C-15:0 2-OH), C-17:0, C-16:0,C- and C-18:1 omega 7c. The DNA G+C content of strain KMK6(T) was 48.8 mol \%. 16S rRNA gene sequence analysis confirmed its placement in the genus Alishewanella, and exhibited sequence similarity levels of below 97 \% to the type strains of validly published Alishewanella species. On the basis of genotypic and phenotypic evidence, strains KMK6(T) is considered to be a novel species of the genus Alishewanella, for which we propose that strain KMK6(T) (=NCIM 5295(T) =BCRC 17848(T)) is assigned to a novel species, Alishewanella solinquinati sp. nov.</p>},
	issn = {0343-8651},
	doi = {10.1007/s00284-013-0385-7},
	author = {Kolekar, Yogesh M. and Pawar, Shrikant P. and Adav, Sunil S. and Zheng, Liu-Qiang and Li, Wen-Jun and Shouche, Yogesh S. and Dastager, Syed Gulam and Kodam, Kisan M.}
}
