@article {46988,
	title = {Early metastable assembly during the stress-induced formation of worm-like amyloid fibrils of nucleic acid binding domains of TDP-43},
	journal = {Biochemistry},
	volume = {59},
	year = {2020},
	month = {JAN},
	pages = {315-328},
	type = {Article},
	abstract = {<p>TDP-43 protein travels between the cytosol and the nucleus to perform its nucleic acid binding functions through its two tandem RNA recognition motif domains (TDP-43(tRRM)). When exposed to various environmental stresses, it forms abnormal aggregates in the cytosol of neurons, which are the hallmarks of amyotrophic lateral sclerosis and other TDP-43 proteinopathies. However, the nature of early structural changes upon stress sensing and the consequent steps during the course of aggregation are not well understood. In this study, we show that under low-pH conditions, mimicking starvation stress, TDP-43(tRRm) undergoes a conformational opening reaction linked to the protonation of buried ionizable residues and grows into a metastable oligomeric assembly (called the {\textquoteleft}{\textquoteleft}low-pH form{\textquoteright}{\textquoteright} or the {\textquoteleft}{\textquoteleft}L form{\textquoteright}{\textquoteright}). In the L form, the protein molecules have disrupted tertiary structure, solvent-exposed hydrophobic patches, and mobile side chains but the native-like secondary structure remains intact. The L form structure is held by weak interactions and has a steep dependence on ionic strength. In the presence of as little as 15 mM KCl, it fully misfolds and further oligomerizes to form a beta-sheet rich {\textquoteleft}{\textquoteleft}beta form{\textquoteright}{\textquoteright} in at least two distinct steps. The beta form has an ordered, stable structure that resembles worm-like amyloid fibrils. The unstructured regions of the protein gain structure during L (sic) beta conversion. Our results suggest that TDP-43(tRRm) could function as a stress sensor and support a recent model in which stress sensing during neurodegeneration occurs by assembly of proteins into metastable assemblies that are precursors to the solid aggregates.</p>
},
	issn = {0006-2960},
	doi = {10.1021/acs.biochem.9b00780},
	author = {Pillai, Meenakshi and Jha, Santosh Kumar}
}
