R.  Bhowmick, Subramanian, A., and Sarkar, R. Rup, ?Exploring the differences in metabolic behavior of astrocyte and glioblastoma: a flux balance analysis approach?, Systems and Synthetic Biology, vol. 9, no. 4, pp. 159-177, 2015.

S.  Banerjee, Subramanian, A., Chattopadhyay, J., and Sarkar, R. Rup, ?Exploring the role of GS-GOGAT cycle in microcystin synthesis and regulation - a model based analysis?, Molecular Biosystems, vol. 13, no. 12, pp. 2603-2614, 2017.

A.  Subramanian and Sarkar, R. Rup, ?Evolutionary perspectives of genotype-phenotype factors in leishmania metabolism?, Journal of Molecular Evolution, vol. 86, no. 7, pp. 443-456, 2018.

P.  Ganguli and Sarkar, R. Rup, ? Exploring immuno-regulatory mechanisms in the tumor microenvironment: model and design of protocols for cancer remission?, Plos One, vol. 13, no. 9, 2018.

S.  Banerjee, Sarkar, R. Rup, and Chattopadhyay, J., ?Effect of copper contamination on zooplankton epidemics?, Journal of Theoretical Biology, vol. 469, pp. 61-74, 2019.

S.  Chowdhury and Sarkar, R. Rup, ?Exploring notch pathway to elucidate phenotypic plasticity and intra-tumor heterogeneity in gliomas?, Scientific Reports, vol. 9, p. 9488, 2019.

S.  Nandi, Ganguli, P., and Sarkar, R. Rup, ?Essential gene prediction using limited gene essentiality information-an integrative semi-supervised machine learning strategy?, PloS One, vol. 15, no. 11, p. e0242943, 2020.

G.  Panditrao, Bhowmick, R., Meena, C., and Sarkar, R. Rup, ?Emerging landscape of molecular interaction networks: opportunities, challenges and prospects?, Journal of Biosciences, vol. 47, no. 2, p. 24, 2022.