Dual action of BPC194: a membrane active peptide killing bacterial cells - Moiset, Gemma; Cirac, Anna D.; Stuart, Marc C. A.; Marrink, Siewert-Jan; Sengupta, Durba; Poolman, Bert (Plos One, 2013)
Membrane active peptides can perturb the lipid bilayer in several ways, such as poration and fusion of the target cell membrane, and thereby efficiently kill bacterial cells. We probe here the mechanistic basis of membrane poration and fusion caused by membrane-active, antimicrobial peptides. We show that the cyclic antimicrobial peptide, BPC194, inhibits growth of Gram-negative bacteria and ruptures the outer and inner membrane at the onset of killing, suggesting that not just poration is taking place at the cell envelope. To simplify the system and to better understand the mechanism of action, we performed Forster resonance energy transfer and cryogenic transmission electron microscopy studies in model membranes and show that the BPC194 causes fusion of vesicles. The fusogenic action is accompanied by leakage as probed by dual-color fluorescence burst analysis at a single liposome level. Atomistic molecular dynamics simulations reveal how the peptides are able to simultaneously perturb the membrane towards porated and fused states. We show that the cyclic antimicrobial peptides trigger both fusion and pore formation and that such large membrane perturbations have a similar mechanistic basis.

Effect of loops and G-quartets on the stability of RNA G-quadruplexes - Pandey, Satyaprakash; Agarwala, Prachi; Maiti, Souvik (Journal of Physical Chemistry B, 2013)
The loop length, loop composition, salt concentration, and number of G-quartets are major determinants of G-quadruplex stability. We examined the effect of each of these factors on the thermal stability and folding topology of a library of RNA quadruplexes. The thermal stability of G2 and G3 RNA quadruplexes was investigated upon varying the loop length (from 1-1-1 to 15-15-15) and salt concentration (from sequence 1 to 100 mM KCl), while the effect of loop composition was explored using 18 naturally occurring potential RNA quadruplexes predicted in untranslated regions (UTRs). We found loop length and quadruplex stability to be inversely related for G2 RNA quadruplexes and G3 RNA quadruplexes with shorter loops. However, melting temperature saturates for G3 RNA quadruplexes with longer loops. RNA G-quadruplexes with longer loops (G3 15-15-15) displayed T-m values significantly higher than the physiological temperature. This study thus highlights the need to modify the consensus motif presently used by quadruplex prediction tools. An increase in the loop size from 7 bases to IS bases in the consensus motif will add to its predictive value for the discovery of potential RNA quadruplexes across transcriptomes.

Electrochemical resolution of multiple redox events for graphene quantum dots - Shinde, Dhanraj B.; Pillai, Vijayamohanan K. (Angewandte Chemie-International Edition, 2013)
Keywords: charging energy; differential pulse voltammetry; graphene; quantum dots; single-electron transfer

Electronic transition dipole moments and dipole oscillator strengths within fock-space multi-reference coupled cluster framework: an efficient and novel approach - Bhattacharya, Debarati; Vaval, Nayana; Pal, Sourav (Journal of Chemical Physics, 2013)
Within the Fock-space multi-reference coupled cluster framework, we have evaluated the electronic transition dipole moments, which determine absorption intensities. These depend on matrix elements between two different wave functions (e. g., ground state to the excited state). We present two different ways, to calculate these transition moments. In the first method, we construct the ground and excited state wave functions with the normal exponential ansatz of Fock-space coupled cluster method and then calculate the relevant off-diagonal matrix elements. In the second approach, we linearize the exponential form of the wave operator which will generate the left vector, by use of Lagrangian formulation. The right vector is obtained from the exponential ansatz. In order to relate the transition moments to oscillator strengths, excitation energies need to be evaluated. The excitation energies are obtained from the Fock-space multi-reference framework. The transition dipole moments of the ground to a few excited states, together with the oscillator strengths of a few molecules, are presented. (C) 2013 American Institute of Physics. [http://dx.doi.org/10.1063/1.4793277]

Electrophile induced branching cascade: a powerful approach to access various molecular scaffolds and their exploration as novel anti-mycobacterial agents - Patil, Nitin T.; Konala, Ashok; Sravanti, Sudha; Singh, Ashita; Ummanni, Ramesh; Sridhar, Balasubramanian (Chemical Communications, 2013)
Herein we report on the Electrophile Induced Branching Cascade (EIBC), a new technique to produce a variety of biologically important molecular scaffolds. Some compounds exhibit excellent activities against Mycobacterium smegmatis.

Enhanced electrochromic coloration in Ag nanoparticle decorated WO3 thin films - Kharade, Rohini R.; Mali, Sawanta S.; Patil, Satish P.; Patil, Kashinath R.; Gang, Myong G.; Patil, Pramod S.; Kim, Jin H.; Bhosale, Popatrao N. (Electrochimica Acta, 2013)
WO3/Ag composite thin films were prepared by microwave assisted sol-gel synthesis (MW-SGS) of WO3 followed by vacuum evaporation of Ag nanoparticles and their enhanced electrochromic coloration was investigated. The composition and morphology of WO3 thin films with different thickness of Ag layer obtained by vacuum evaporation were investigated. Distinct plasmon absorption bands of Ag nanoparticle thin films were obtained. The optical band gap energy of WO3/Ag films decreased with increasing the Ag layer thickness. The surface of these films has been examined using X-ray photoelectron spectroscopy (XPS) to gain information about the chemical states of species present at surfaces. Experimental results indicated that the conductivity of the films increased after surface modification by Ag layer. To investigate the origin of enhanced electrochromic absorption in optical properties, working electrode consisting of WO3/Ag thin film was used and observed the optical properties during electrochemical reaction. It was found that composite electrode shows enhancement in electrochromic properties in terms of optical modulation (Delta OD) and coloration efficiency (eta). (C) 2013 Elsevier Ltd. All rights reserved.
Keywords: Ag2WO4; CIE coordinates; Electrochromism; SPR; WO3/Ag composite thin films

Enhancement of chemical stability and crystallinity in porphyrin-containing covalent organic frameworks by intramolecular hydrogen bonds - Kandambeth, Sharath; Shinde, Digambar Balaji; Panda, Manas K.; Lukose, Binit; Heine, Thomas; Banerjee, Rahul (Angewandte Chemie-International Edition, 2013)
Keywords: covalent organic frameworks; hydrogen bonds; mesoporous materials; porphyrinoids; tautomerism

Epoxidation of styrene by t-butyl hydroperoxide over gold nanoparticles supported on Yb2O3: effect of gold deposition method, gold loading, and calcination temperature of the catalyst on its surface properties and catalytic performance - Choudhary, Vasant R.; Dumbre, Deepa K.; Patil, N. S.; Uphade, B. S.; Bhargava, Suresh Kumar (Journal of Catalysis, 2013)
Surface properties and epoxidation performance of Au/Yb2O3 catalyst are influenced by the method of gold deposition [viz. deposition-precipitation (DP), homogeneous deposition-precipitation (HDP) or impregnation], gold loading (0.9-6.6 wt%), and the catalyst calcination temperature (400-900 degrees C)]. The catalyst showed the best epoxidation performance when it was prepared by the HDP method and calcined at 500 degrees C. The Au/Yb2O3 catalyst even after calcination at 900 degrees C showed good activity and epoxide selectivity. Both Au-0 and Au3+ surface species were found in the catalyst calcined at 800 degrees C, but only Au-0 species were observed at the lower calcination temperatures (<600 degrees C). The selectivity for styrene oxide increased continuously with the reaction temperature (from 75 degrees C to 97 degrees C) and time (1-5 h), indicating that styrene oxide did not undergo secondary reactions under these conditions. (C) 2013 Elsevier Inc. All rights reserved.
Keywords: Au/Yb2O3 catalyst; Epoxidation of styrene; gold nanoparticles; Styrene oxide; tert-Butyl hydroperoxide

Ester vs. amide on folding: a case study with a 2-residue synthetic peptide - Vijayadas, Kuruppanthara N.; Nair, Roshna V.; Gawade, Rupesh L.; Kotmale, Amol S.; Prabhakaran, Panchami; Gonnade, Rajesh G.; Puranik, Vedavati G.; Rajamohanan, Pattuparambil R.; Sanjayan, Gangadhar J. (Organic & Biomolecular Chemistry, 2013)
Although known for their inferiority as hydrogen-bonding acceptors when compared to amides, esters are often found at the C-terminus of peptides and synthetic oligomers (foldamers), presumably due to the synthetic readiness with which they are obtained using protected peptide coupling, deploying amino acid esters at the C-terminus. When the H-bonding interactions deviate from regularity at the termini, peptide chains tend to ``fray apart''. However, the individual contributions of C-terminal esters in causing peptide chain end-fraying goes often unnoticed, particularly due to diverse competing effects emanating from large peptide chains. Herein, we describe a striking case of a comparison of the individual contributions of C-terminal ester vs. amide carbonyl as a H-bonding acceptor in the folding of a peptide. A simple two-residue peptide fold has been used as a testing case to demonstrate that amide carbonyl is far superior to ester carbonyl in promoting peptide folding, alienating end-fraying. This finding would have a bearing on the fundamental understanding of the individual contributions of stabilizing/destabilizing non-covalent interactions in peptide folding.

Evaluation of ethanol production by a new isolate of yeast during fermentation in synthetic medium and sugarcane bagasse hemicellulosic hydrolysate - Hande, Aparna; Mahajan, Siddharth A.; Prabhune, Asmita (Annals of Microbiology, 2013)
A new xylose fermenting yeast was isolated from over-ripe banana by enrichment in xylose-containing medium. The phylogenetic analysis of ITS1-5.8S-ITS2 region sequences of ribosomal RNA of isolate BY2 revealed that it shows affiliation to genus Pichia and clades with Pichia caribbica. In batch fermentation, Pichia strain BY2 fermented xylose, producing 15 g l(-1) ethanol from 30 g l(-1) xylose under shaking conditions at 28A degrees C, with ethanol yield of 0.5 g g(-1) and volumetric productivity of 0.31 g l(-1) h(-1). The optimum pH range for ethanol production from xylose by Pichia strain BY2 was 5-7. Pichia strain BY2 also produced 6.08 g l(-1) ethanol from 30 g l(-1) arabinose. Pichia strain BY2 can utilize sugarcane bagasse hemicellulose acid hydrolysate for alcohol production, efficiency of fermentation was improved by neutralization, and sequential use of activated charcoal adsorption method. Percent total sugar utilized and ethanol yield for the untreated hydrolysate was 17.14% w/v and 0.33 g g(-1), respectively, compared with 66.79% w/v and 0.45 g g(-1), respectively, for treated hemicellulose acid hydrolysate. This new yeast isolate showed ethanol yield of 0.45 g g(-1) and volumetric productivity of 0.33 g l(-1) h(-1) from sugarcane bagasse hemicellulose hydrolysate detoxified by neutralization and activated charcoal treatment, and has potential application in practical process of ethanol production from lignocellulosic hydrolysate.
Keywords: D-xylose; Ethanol; Pichia; Sugarcane bagasse hemicellulose

Evidence and characterization of dynamic heterogeneity in binary mixtures of phosphoric acid and benzimidazole - Pahari, Swagata; Roy, Sudip (Journal of Chemical Physics, 2013)
We report here anomalous diffusions of components in mixtures of monomer of polybenzimidazole, i.e., 2-phenyl-1H, 1'H-5,5'-bibenzo[d] imidazole (BI) and phosphoric acid (PA) from molecular dynamics simulations. We have observed initial drop and further increase in self-diffusion constant for both monomer molecule (BI) and PA with gradual increase in PA concentration. The origin of such anomalous diffusion is identified in this work, which happens to be the presence of dynamic heterogeneity in each component of the binary mixture. We characterized microscopic picture of dynamical heterogeneity by finding correlation between dynamical heterogeneity and structural arrangement among the components of the binary system. Different types of H-bonding arrangements in the BI-PA systems at different concentration of PA are observed. The stability of the H-bonded network consisting of different types of H-bonds between BI and PA in the system has been studied by calculating the lifetime of various H-bonds. The results indicate that there are fast and slow moving PA molecules in the mixtures because of coexistence of different types of hydrogen bonds among the components of the mixture. (C) 2013 AIP Publishing LLC.

Exclusion from hexagonal mesophase surfactant domains drives end-to-end enchainment of rod-like particles - Sharma, Kamendra P.; Ganai, Anal Kumar; Sen, Debasis; Bhagavatula L. V. Prasad; Kumaraswamy, Guruswamy (Journal of Physical Chemistry B, 2013)
Anisotropic rod-like particles assemble end-to-end when the surfactant/water matrix in which they are dispersed is cooled from the isotropic to the lyotropic hexagonal phase. We demonstrate the formation of such end-to-end assemblies for gold nanorods, which are tens of nanometers in size, as well as for micrometer-sized ellipsoidal polystyrene particles. In both cases, the particles are well-dispersed in the low-viscosity surfactant/water phase above the isotropic-H-1 transition temperature. On cooling into the H-1 phase, mesophase domains form and the particles are expelled to the isotropic phase. As the H-1 domains grow and finally impinge, the particles are localized at the domain boundaries where they reorient and assemble end-to-end. Remarkably, we observe the formation of end-to-end assemblies of gold nanorods even for volume fractions as low as 2 x 10(-6) in the initially dispersed state. The extent of particle ``enchainment'' increases with the particle concentration and with the aspect ratio of the particles.

Expedient preparative isolation, quantification and characterization of limonoids from neem fruits - Haldar, Saikat; Phapale, Prasad B.; Kolet, Swati P.; Thulasiram, Hirekodathakallu V. (Analytical Methods, 2013)
Major basic limonoids from Neem fruits such as azadirone, epoxyazadiradione and azadiradione were isolated in preparative scale using an automated and rapid medium pressure liquid chromatography (MPLC)-based protocol. They were individually quantified using HPLC. An LC-ESI-MS/MS-based rapid identification technique was developed for the high-throughput screening of these limonoids in phytochemical extracts.

Exploring the effectiveness of different Lewis pair combinations in caged structures for the catalysis of ammonia borane dehydrogenation: a DFT study - Pal, Amrita; Vanka, Kumar (Physical Chemistry Chemical Physics, 2013)
Zero dimensional cage structures containing four phenyl rings separated by imine linkers have recently been synthesized. In the current work, through a computational investigation using density functional theory (DFT), we demonstrate that modifying such cages by replacing the 2, 4, 6 carbon atoms in the phenyl rings to yield new rings, as well as replacing the imine moiety in the linker by other electronegative atoms, can yield interesting new cages that can be reactive in catalysing reactions such as the dehydrogenation of ammonia borane-an important reaction in hydrogen storage research. Specifically, it is predicted that phosphorus-nitrogen pairs (phosphorus in the 2, 4, 6 positions in the ring, nitrogen in the linker position), germanium-nitrogen and germanium-phosphorus pair combinations would lead to effective Lewis pairs that can work in tandem to dehydrogenate ammonia borane efficiently under room temperature conditions.

Extended coupled cluster through nth perturbation order for molecular response properties: a comparative study - Gupta, Jitendra; Manohar, Prashant Uday; Ghosh, Aryya; Vaval, Nayana; Pal, Sourav (Chemical Physics, 2013)
In this paper, we have presented and analyzed the extended coupled cluster (ECC) energy functional, truncated up to nth perturbation order in which expansion is limit to operators of the single and double excitations. The expression for the first order energy derivatives based on the above truncation schemes has been derived and numerically analyzed. We have done a comparative study for dipole moment in various perturbative ECC (n) methods (2 <= n <= 5) for three systems (HF, H2O and BH) at equilibrium geometry. We have particularly studied two variants of ECC (4) and ECC (5*) method for stretched geometry. We have analyzed the contribution of important terms present in ECC functional based on perturbative argument. We have compared our results with standard coupled cluster (CCSD) as well as cubic truncated ECC and also benchmarked with the full CI results wherever available. (c) 2013 Elsevier B.V. All rights reserved.
Keywords: Dipole moment; Energy functional; Extended coupled cluster

Extracellular biosynthesis of water dispersible, protein capped Mn5O8 nanoparticles using the fungus fusarium oxysporum and study of their magnetic behavior - Uddin, Imran; Poddar, Pankaj (Journal of Nanoengineering and Nanomanufacturing, 2013)
Nanomaterials of different sizes, shapes and compositions are being synthesized by various chemical, physical and biological routes. The pressing need of the hour is to have a synthesis protocol which does not harm the environment in any way and is inexpensive so that the benefits can be reaped by all. In this regard, the biological synthesis routes weigh over the chemical and physical ones which are toxic and expensive respectively. The biological routes occur at ambient conditions of temperature, pressure and pH and help protect the ecosystem as these do not employ any hazardous chemicals. Moreover, the nanoparticles obtained via biological routes are naturally protein capped which prevents their agglomeration and helps them retain their shape, size and stability for several months. One such important material is manganese oxide (Mn5O8) which at the nanoscale, has found good use in catalysis and as ionic conductors in fuel cells or batteries. The compound Mn5O8 exists in mixed valences of Mn2+ and Mn4+ and has drawn attention due to its antiferromagnetic nature. Here we report extracellular biosynthesis of manganese oxide (Mn5O8 nanoparticles in the size range of 10–11 nm at room temperature by challenging the fungus Fusarium oxysporum with manganese (II) acetate tetrahydrate [(CH3CO2)2 Mn · 4H2O] as precursor. The Mn5O8 nanoparticles so formed were characterized by TEM, XRD, FTIR, XPS, and TGA. Two mixed manganese ion valencies (Mn2+ and Mn4+) of Mn5O8 have been confirmed by XPS studies and antiferromagnetic transitions by magnetic measurements.

Facile strategy for synthesis of ,-heterobifunctionalized poly (epsilon-caprolactones) and poly (methyl methacrylate)s containing ``clickable'' aldehyde and allyloxy functional groups using initiator approach - Sane, Prakash S.; Tawade, Bhausaheb V.; Parmar, Indravadan; Kumari, Savita; Nagane, Samadhan; Wadgaonkar, Prakash P. (Journal of Polymer Science Part A-Polymer Chemistry, 2013)
Two new initiators, namely, 4-(4-(2-(4-(allyloxy) phenyl)-5-hydroxypentane 2-yl) phenoxy)benzaldehyde and 4-(4-(allyloxy) phenyl)-4-(4-(4-formylphenoxy) phenyl) pentyl 2-bromo-2-methyl propanoate containing clickable hetero-functionalities namely aldehyde and allyloxy were synthesized starting from commercially available 4,4-bis(4-hydroxyphenyl) pentanoic acid. These initiators were utilized, respectively, for ring opening polymerization of epsilon-caprolactone and atom transfer radical polymerization of methyl methacrylate. Well-defined -aldehyde, -allyloxy heterobifunctionalized poly(epsilon-caprolactones) (Mn,GPC: 590029,000, PDI: 1.261.43) and poly(methyl methacrylate)s (Mn,GPC: 530028800, PDI: 1.191.25) were synthesized. The kinetic study of methyl methacrylate polymerization demonstrated controlled polymerization behavior. The presence of aldehyde and allyloxy functionality on polymers was confirmed by 1H NMR spectroscopy. Aldehyde-aminooxy and thiol-ene metal-free double click strategy was used to demonstrate reactivity of functional groups on polymers. (c) 2013 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2013, 51, 2091-2103
Keywords: atom transfer radical polymerization; Click chemistry; functional polymers; ring opening polymerization

Fine control of nanoparticle sizes and size distributions: temperature and ligand effects on the digestive ripening process - Sahu, Puspanjali; Bhagavatula L. V. Prasad (Nanoscale, 2013)
It is demonstrated that a fine control over the size and size distribution of nanoparticles could be achieved using digestive ripening at different temperatures. Such variations in size and size distributions hugely influence the self-assembled processes in nanoparticles, and result in superlattice structures that are controlled by subtle interplay between ligand orientational entropy and their interdigitation and the van der Waals attraction between the metal cores.

Fluorescent sophorolipid molecular assembly and its magnetic nanoparticle loading: a pulsed laser process - Singh, Pradeep Kumar; Mukherji, Ruchira; Joshi-Navare, Kasturi; Banerjee, Abhik; Gokhale, Rohan; Nagane, Satyawan; Prabhune, Asmita; Ogale, Satishchandra (Green Chemistry, 2013)
We report realization of strong green fluorescence in a fully biocompatible highly spherical mesoscale molecular assembly of sophorolipid created by pulsed UV laser processing of a water-based dispersion of sophorolipid. Remarkably, the said fluorescence is totally absent in the original molecule of sophorolipid and is thus the property of the pulsed laser induced modifications in the molecule and the assembly. We have separately examined the consequences of laser irradiation for glucose and oleic acid components which form the sophorolipid. This fluorescence character appears to be driven by the oleic acid component while the assembly process is assisted by the glucose component. Importantly the laser synthesized mesostructures can be easily redispersed in an aqueous medium after being dried and can also be loaded with magnetic nanoparticles (magnetite) for inducing the hyperthermia effect.

Fock space multireference coupled cluster theory: study of shape resonance - Bhattacharya, Sumantra; Vaval, Nayana; Pal, Sourav (International Journal of Quantum Chemistry, 2013)
The complex absorbing potential along with correlated independent particle potential (CIP) Fock space multireference coupled cluster method is used for the study of resonances. We have studied shape resonance of e(-) - F-2, e(-) - N2O and e(-) -CO molecules. In particular, we have studied e(-) - F-2 scattering at different bond lengths to know whether F-2(-) is bound at the equilibrium bond length of F-2. (C) 2013 Wiley Periodicals, Inc.
Keywords: correlated independent particle potential; Fock-space multireference coupled cluster theory; shape resonance

Four 3D Cd(II)-based metal organic hybrids with different N,N `-donor spacers: syntheses, characterizations, and selective gas adsorption properties - Bhattacharya, Biswajit; Dey, Rajdip; Pachfule, Pradip; Banerjee, Rahul; Ghoshal, Debajyoti (Crystal Growth & Design, 2013)
{Four new metal organic frameworks with bivalent cadmium, disodium succinate (Na(2)suc), and four different N,N'-donor ligands, i.e., {[Cd(L1)(suc)]center dot(H2O)(3)}(n) (1), {[Cd(L2)(suc)]center dot(H2O)(2)\

Gamma-glutamyl transferases: a structural, mechanistic and physiological perspective - Balakrishna, Sharath; Prabhune, Asmita (Frontiers in Biology, 2013)
Gamma glutamyl transferases (GGT) are highly conserved enzymes that occur from bacteria to humans. They remove terminal γ-glutamyl residue from peptides and amides. GGTs play an important role in the homeostasis of glutathione (a major cellular antioxidant) and in the detoxification of xenobiotics in mammals. They are implicated in diseases like diabetes, inflammation, neurodegenerative diseases and cardiovascular diseases. The physiological role of GGTs in bacteria is still unclear. Nothing is known about the basis for the strong conservation of the enzyme across the living system. The review focuses on the enzyme’s physiology, chemistry and structural properties of the enzyme with emphasis on the evolutionary relationships. The available data indicate that the members of the GGT family share common structural features but are functionally heterogenous.

Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum) - Barvkar, Vitthal T.; Pardeshi, Varsha C.; Kale, Sandip M.; Qiu, Shuqing; Rollins, Meaghen; Datla, Raju; Gupta, Vidya S.; Kadoo, Narendra Y. (Planta, 2013)
MicroRNAs (miRNAs) are small (20-24 nucleotide long) endogenous regulatory RNAs that play important roles in plant growth and development. They regulate gene expression at the post-transcriptional level by translational repression or target degradation and gene silencing. In this study, we identified 116 conserved miRNAs belonging to 23 families from the flax (Linum usitatissimum L.) genome using a computational approach. The precursor miRNAs varied in length; while most of the mature miRNAs were 21 nucleotide long, intergenic and showed conserved signatures of RNA polymerase II transcripts in their upstream regions. Promoter region analysis of the flax miRNA genes indicated prevalence of MYB transcription factor binding sites. Four miRNA gene clusters containing members of three phylogenetic groups were identified. Further, 142 target genes were predicted for these miRNAs and most of these represent transcriptional regulators. The miRNA encoding genes were expressed in diverse tissues as determined by digital expression analysis as well as real-time PCR. The expression of fourteen miRNAs and nine target genes was independently validated using the quantitative reverse transcription PCR (qRT-PCR). This study suggests that a large number of conserved plant miRNAs are also found in flax and these may play important roles in growth and development of flax.
Keywords: Digital expression analysis; Gene cluster; Linseed; miRNA; MiRNA target transcript; Promoter analysis

Genome-wide identification and characterization of nucleotide binding site leucine-rich repeat genes in linseed reveal distinct patterns of gene structure - Kale, Sandip M.; Pardeshi, Varsha C.; Barvkar, Vitthal T.; Gupta, Vidya S.; Kadoo, Narendra Y. (Genome, 2013)
Plants employ different disease-resistance genes to detect pathogens and to induce defense responses. The largest class of these genes encodes proteins with nucleotide binding site (NBS) and leucine-rich repeat (LRR) domains. To identify the putative NBS-LRR encoding genes from linseed, we analyzed the recently published linseed genome sequence and identified 147 NBS-LRR genes. The NBS domain was used for phylogeny construction and these genes were classified into two well-known families, non-TIR (CNL) and TIR related (TNL), and formed eight clades in the neighbor-joining bootstrap tree. Eight different gene structures were observed among these genes. An unusual domain arrangement was observed in the TNL family members, predominantly in the TNL-5 clade members belonging to class D. About 12% of the genes observed were linseed specific. The study indicated that the linseed genes probably have an ancient origin with few progenitor genes. Quantitative expression analysis of five genes showed inducible expression. The in silico expression evidence was obtained for a few of these genes, and the expression was not correlated with the presence of any particular regulatory element or with unusual domain arrangement in those genes. This study will help in understanding the evolution of these genes, the development of disease resistant varieties, and the mechanism of disease resistance in linseed.
Keywords: Flax; in silico gene expression; motif analysis; NBS-LRR; Phylogenetic analysis; Promoter analysis

GIAO/DFT studies on 1,2,4-triazole-5-thiones and their propargyl derivatives - Phalgune, Usha D.; Vanka, Kumar; Rajamohanan, P. R. (Magnetic Resonance in Chemistry, 2013)
Density functional theory (DFT)/Becke-Lee-Yang-Parr (B3LYP) and gauge-including atomic orbital (GIAO) calculations were performed on a number of 1,2,4-triazole derivatives, and the optimized structural parameters were employed to ascertain the nature of their predominant tautomers. C-13 and N-15 NMR chemical shifts of 3-substituted 1,2,4-triazole-5-thiones and their propargylated derivatives were calculated via GIAO/DFT approach at the B3LYP level of theory with geometry optimization using a 6-311++G** basis set. A good agreement between theoretical and experimental C-13 and N-15 NMR chemical shifts could be found for the systems investigated. The data generated were useful in predicting N-15 chemical shifts of all the nitrogen atoms of the triazole ring, some of which could not be obtained in solution state N-15 HMBC/HSQC NMR measurements. The energy profile computed for the dipropargylated derivatives was found to follow the product distribution profile of regioisomers formed during propargylation of 1,2,4-triazole thiones. Copyright (c) 2013 John Wiley & Sons, Ltd.
Keywords: 1; 2; 4-triazole-5-thiones; C-13; DFT; GIAO; N-15; NMR; Regioisomers; tautomers

Glucose oxidase conjugated H2O2 sensitive CdTe QDs: an effective fluorescence tool for glucose sensing - Singh, Pooja; Prabhune, Asmita; Ogale, Satishchandra B.; Guin, Debanjan (Journal of Materials Chemistry B, 2013)
Water-soluble quantum dots (QDs) are extensively used for molecular sensing because of the flexibility they offer in terms of modification of the QDs surface with a variety of functional groups using thiol chemistry and monitoring by fluorescence intensity. We describe a simple assay that allows the photoluminescence (PL) detection of H2O2 and glucose in aqueous samples and demonstrate its applicability by estimating glucose in blood. To enable the glucose detection, we functionalized the 3-mercaptopropanoic acid (MPA) capped CdTe QDs with glucose oxidase (GOx), the enzyme specific to b-D-glucose, using carbodiimide chemistry. The fluorescence of the GOx-functionalized CdTe QDs was quenched on the interaction with glucose. The same photoluminescence quenching was also observed in gel form, when a GOx modified CdTe QDs loaded agarose gel was dipped in H2O2 and glucose solutions, respectively.

G-quadruplex augments translation in the 5 ` untranslated region of transforming growth factor beta 2 - Agarwala, Prachi; Pandey, Satyaprakash; Mapa, Koyeli; Maiti, Souvik (Biochemistry, 2013)
Transforming growth factor beta 2 (TGF beta 2) is a versatile cytokine with a prominent role in cell migration, invasion, cellular development, and immunomodulation. TGF beta 2 promotes the malignancy of tumors by inducing epithelial-mesenchymal transition, angiogenesis, and immunosuppression. As it is well-documented that nucleic acid secondary structure can regulate gene expression, we assessed whether any secondary motif regulates its expression at the post-transcriptional level. Bioinformatics analysis predicts an existence of a 23-nucleotide putative G-quadruplex sequence (PG4) in the 5' untranslated region (UTR) of TGF beta 2 mRNA. The ability of this stretch of sequence to form a highly stable, intramolecular parallel quadruplex was demonstrated using ultraviolet and circular dichroism spectroscopy. Footprinting studies further validated its existence in the presence of a neighboring nucleotide sequence. Following structural characterization, we evaluated the biological relevance of this secondary motif using a dual luciferase assay. Although PG4 inhibits the expression of the reporter gene, its presence in the context of the entire 5' UTR sequence interestingly enhances gene expression. Mutation or removal of the G-quadruplex sequence from the 5' UTR of the gene diminished the level of expression of this gene at the translational level. Thus, here we highlight an activating role of the G-quadruplex in modulating gene expression of TGF beta 2 at the translational level and its potential to be used as a target for the development of therapeutics against cancer.

G-Quadruplexes as tools for synthetic biology - Agarwala, Prachi; Pandey, Satyaprakash; Maiti, Souvik (Chembiochem, 2013)
With the potential to engineer biological systems, synthetic biology is an emerging field that combines various disciplines of sciences. It encompasses combinations of DNA, RNA and protein modules for constructing desired systems and the rewiring of existing signalling networks. Despite recent advances, this field still lags behind in the artificial reconstruction of cellular processes, and thus demands new modules and switches to create genetic circuits. The widely characterised noncanonical nucleic acid secondary structures, G-quadruplexes are promising candidates to be used as biological modules in synthetic biology. Structural plasticity and functional versatility are significant G-quadruplex traits for its integration into a biological system and for diverse applications in synthetic circuits.
Keywords: G-quadruplexes; ribozymes; synthetic biology; topology; zipcodes

Growth of oriented single crystalline La-doped TiO2 nanorod arrays electrode and investigation of optoelectronic properties for enhanced photoelectrochemical activity - Sadhu, Subha; Poddar, Pankaj (RSC Advances, 2013)
Fabrication of single crystalline, oriented one-dimensional (1D) rods or wires of titania on transparent conducting oxide (TCO) substrates have enormous significance in the area of photoelectrochemical research owning to their unique optoelectronic properties. It is possible to modify the electrical conductivity and optoelectronic properties of titania by intentional inclusion of atomic impurity in the material. Here for the first time, we have doped lanthanum homogeneously in TiO2 nanorod arrays. The homogeneous distribution of lanthanum in titania lattice is confirmed by scanning transmission electron microscopy (STEM) elemental mapping and line scanning analysis. After doping with lanthanum, there is a negative shift of the flat-band potential of the TiO2 nanorods and the charge carrier density of the nanorods is also improved. The energy-conversion efficiency of a dye-sensitized solar cell based on 4 mol% La-doped nanorods is increased about 21% compared with the undoped one.

Highly concise and practical route to clavaminols, sphinganine and (+)-spisulosine via indium mediated allylation of alpha-hydrazino aldehyde and a theoretical insight into the stereochemical aspects of the reaction - Pandey, Menaka; Chowdhury, Partha Sarathi; Dutta, Achintya Kumar; Kumar, Pradeep; Pal, Sourav (RSC Advances, 2013)
A conceptually different approach has been employed for the synthesis of 1,2-amino alcohols by proline-catalyzed alpha-amination of aldehyde and one-pot indium mediated allylation of the crude alpha-hydrazino aldehydes. DFT based quantum chemical calculations have been performed to obtain a quantitative explanation of the stereoselectivity of the reaction.

High-resolution outgoing longwave radiation dataset from Kalpana-1 satellite during 2004-2012 - Mahakur, M.; Prabhu, A.; Sharma, A. K.; Rao, V. R.; Senroy, S.; Singh, Randhir; Goswami, B. N. (Current Science, 2013)
Long record of high-resolution quality-controlled outgoing longwave radiation (OLR) from geostationary platforms like Kalpana-1 has the potential not only to provide detailed information of cloud types contributing to the measure of rain, but also helps unravel convective cloud organization in the tropics from small scale to meso- and synoptic scales. A research quality product of three hourly OLR for the period May 2004 June 2012 is produced from Kalpana-1 very high resolution radiometer (VHRR) radiances over the Indian region (40 degrees S-40 degrees N, 25-125 degrees E) in a regular grid of 0.25 x 0.25 degrees. The quality and usefulness of the dataset is demonstrated here using some illustrative examples. Although these data are available for a relatively short-period, it is shown that they will be potentially more useful than the widely used OLR from NOAA satellites in representing the annual cycles, particularly over the desert and humid oceans, due to their frequent sampling and quality. The active-break periods in the Indian summer monsoon picked up by both the OLR match well. This three hourly OLR estimated from Kalpana-1 VHRR is able to describe the fine-scale structure of the diurnal variation over the region.
Keywords: Active break periods; diurnal variation; geostationary platforms; outgoing longwave radiation

Hollow nanogold/meso-magnetite composite: pulsed laser synthesis, properties, and biosensing application - Chaudhari, Nilima; Warule, Sambhaji; Agrawal, Shailaja; Thakare, Vishal; Jouen, Samuel; Hannoyer, Beatrice; Kale, Bharat; Paknikar, Kishore; Ogale, Satishchandra B. (Journal of Nanoparticle Research, 2013)
A facile and template-free UV (Excimer) laser photolysis process is demonstrated to transform a Fe-complex into unique hollow Fe3O4 nanosphere morphology with each sphere having nanometric pores and an opening. Depending on the Fe-complex concentration and processing time interesting configurations are seen to evolve. When an identical process is applied to a mixture of Fe-complex and chloroauric acid an enthrallingly decorated Au-Fe3O4 nanostructure evolves, with Au nanoparticles surface-loaded on mesospheric Fe3O4. This room temperature process implemented under normal laboratory conditions is clearly versatile and applicable to heterojunction nanomaterials synthesis in a single-step process. The potential application of these gold-decorated magnetic nanostructures was also investigated for immuno-magnetic capture of E. coli in biosensing and these were found to be sensitive even below 1,000 cfu/ml. The test results demonstrate linear sensing response in the range of 10(3)-10(5) cfu/ml. We also show that these nanostructures can be used for simple electrical conductivity-based biosensing since they show dramatic conductivity change in a simple drop-cast test. A new laser-based approach to the synthesis of unique hollow sphere morphology of magnetite (Fe3O4) without and with Au nanoparticle decoration is presented. The potential application of these gold-decorated magnetic nanostructures was also investigated for immuno-magnetic capture of E. coli in biosensing and these were found to be sensitive even below 1,000 cfu/ml.
Keywords: E. coli cells; Fe-complex; Meso-magnetite; Nanobiotechnology; Nanocomposite; Pulse laser irradiation

Human mitochondrial NDUFS3 protein bearing leigh syndrome mutation is more prone to aggregation than its wild-type - Jaokar, Tulika M.; Patil, Deepak P.; Shouche, Yogesh S.; Gaikwad, Sushama M.; Suresh, C. G. (Biochimie, 2013)
NDUFS3 is an integral subunit of the Q module of the mitochondrial respiratory Complex-I. The combined mutation (T145I + R199W) in the subunit is reported to cause optic atrophy and Leigh syndrome accompanied by severe Complex-I deficiency. In the present study, we have cloned and overexpressed the human NDUFS3 subunit and its double mutant in a soluble form in Escherichia coli. The wild-type (w-t) and mutant proteins were purified to homogeneity through a serial two-step chromatographic purification procedure of anion exchange followed by size exclusion chromatography. The integrity and purity of the purified proteins was confirmed by Western blot analysis and MALDI-TOF/TOF. The conformational transitions of the purified subunits were studied through steady state as well as time resolved fluorescence and CD spectroscopy under various denaturing conditions. The mutant protein showed altered polarity around tryptophan residues, changed quenching parameters and also noticeably altered secondary and tertiary structure compared to the w-t protein. Mutant also exhibited a higher tendency than the w-t protein for aggregation which was examined using fluorescent (Thioflavin-T) and spectroscopic (Congo red) dye binding techniques. The pH stability of the w-t and mutant proteins varied at extreme acidic pH and the molten globule like structure of w-t at pH1 was absent in case of the mutant protein. Both the w-t and mutant proteins showed multi-step thermal and Gdn-HCI induced unfolding. Thus, the results provide insight into the alterations of NDUFS3 protein structure caused by the mutations, affecting the overall integrity of the protein and finally leading to disruption of Complex-I assembly. (C) 2013 Elsevier Masson SAS. All rights reserved.
Keywords: Aggregation Fluorescence lifetime; Complex-I; Leigh syndrome; NDUFS3

Hysteresis and charge trapping in graphene quantum dots - Kalita, Hemen; Harikrishnan, V; Shinde, Dhanraj B.; Pillai, Vijayamohanan K.; Aslam, Mohammed (Applied Physics Letters, 2013)
We report current hysteresis in response to applied voltage in graphene quantum dots of average diameter 4.5 +/- 0.55 nm, synthesized electrochemically using multiwalled carbon nanotubes. In response to step voltages, transient current decay, characteristic of deep and shallow level charge traps with time constants 186 ms and 6 s, is observed. Discharging current transients indicate charge storage of the order of 100 mu C. Trap states are believed to arise due to the fast physisorption of external adsorbates, which are found to have a significant effect on charge transport and changes the resistance of the prepared device by an order of 3. (C) 2013 American Institute of Physics.

Impinging jet micromixer for flow synthesis of nanocrystalline MgO: role of mixing/impingement zone - Kumar, D. V. Ravi; Bhagavatula L. V. Prasad; Kulkarni, A. A. (Industrial & Engineering Chemistry Research, 2013)
Continuous flow synthesis of nanomaterials via sol-gel process using microreactors has not received much attention. For the synthesis of gels where the reaction time is of the order of few seconds to few tens of seconds, microchannel reactors are an excellent processing option. However since a `gel' does not `flow' easily, making it in a microchannel usually clogs the microchannel. We envisaged that by using an impinging jet micromixer, where the two reactants impinge and collide to form a mixing zone outside the micromixer, this problem could be circumvented. Here we report a successful implementation of continuous flow synthesis of metal oxides formed by the rapid sol-gel process taking the nanocrystalline MgO (NC-MgO) as a specific example. Furthermore, we clearly demonstrate that the nature of the mixing zone formed by the impinging jets governs the surface area of the product. Specific flow rate and impingement angle are identified that yield high surface area materials.

In situ synthesis and surface functionalization of gold nanoparticles with curcumin and their antioxidant properties: an experimental and density functional theory investigation - Singh, Dheeraj K.; Jagannathan, Ramya; Khandelwal, Puneet; Abraham, Priya Mary; Poddar, Pankaj (Nanoscale, 2013)
Curcumin ((1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)-1,6-heptadiene-3,5-dione) is an active component of turmeric; it is responsible for its characteristic yellow color and therapeutic potential, but its poor bioavailability remains a major challenge. In order to improve the bioavailability of curcumin, various approaches have been used. One of the possible approaches to increase the bioavailability of curcumin is its conjugation on the surface of metal nanoparticles. Therefore, in the present study, we report the binding of curcumin on the surface of gold nanoparticles (AuNPs). The AuNPs were synthesized by the direct reduction of HAuCl4 using curcumin in the aqueous phase, without the use of any other reducing agents. We found that curcumin acts both as a reducing and capping agent, stabilizing the gold sol for many months. Moreover, these curcumin-capped AuNPs also show good antioxidant activity which was confirmed by the DPPH (2,2-diphenyl-l-picrylhydrazyl) radical test. Thus, the surface functionalization of AuNPs with curcumin may pave a new way of using the curcuminoids towards possible drug delivery and therapeutics. Apart from the experimental study, a detailed quantum chemical calculation using density functional theory (DFT) has been performed, in order to investigate the formation of a complex of curcumin with Au3+ ions in different possible conformational isomeric forms. Our theoretical calculations indicate the evidence of electron transfer from curcumin into the Au center and essentially indicate that as a consequence of complexation, Au3+ ions are reduced to Au-0. Our theoretical results also propose that it is the breakage of intramolecular H-bonding that probably leads to the increased availability of curcumin in the presence of gold ions and water molecules.

Influence of charge and ligand on the finite temperature behavior of gold clusters: a BOMD study on Au-6 cluster - Manzoor, Dar; Pal, Sourav; Krishnamurty, Sailaja (Journal of Physical Chemistry C, 2013)
Conformation and electronic charge on a gold cluster are known to determine its catalytic property. However, little is known on the finite temperature behavior of various gold cluster conformations. Much less is known on the role of charge or a ligand in stabilizing a conformation at finite temperatures. In this work, we have carried out relativistic density functional theory (DFT) based molecular dynamical simulations on neutral and charged Au-6 clusters with an aim of understanding the stability of ground state conformations as a function of charge on the cluster. Our simulations reveal that cationic and anionic Au-6 clusters undergo conformational transitions at 500 K where as neutral Au-6 cluster retains its ground state conformation up to a temperature of 1100 K. In order to look into the factors leading to the stabilization of neutral Au-6 cluster (or destabilization of cationic and anionic Au-6 clusters), structural and electronic properties are analyzed. Factors such as charge redistribution within the atoms and composition of molecular orbitals are seen to contribute towards stronger Au-Au bonds in Au-6(0) thereby stabilizing it considerably. Following the analysis, simulations are also extended to neutral, cationic, and anionic Au-6-COn (n = 1,2) complexes. In the case of CO chemisorbed Au-6 clusters, neutral and negatively charged ground state conformations are stable up to nearly 800 K, while the positively charged Au-6 ground state conformation collapses at room temperature. This work, in short demonstrates how charge or even a ligand can be used to moderate the physical properties of a gold cluster.

Influence of the sophorolipid molecular geometry on their self-assembled structures - Dhasaiyan, Prabhu; Banerjee, Agnimitra; Visaveliya, Nikunjkumar; Bhagavatula L. V. Prasad (Chemistry-an Asian Journal, 2013)
Keywords: bolaamphiphiles; helical structures; p-p stacking; Self-assembly; sophorolipids

Interatomic coulombic decay in (HF)n,(n=2-3) clusters using CAP/EOM-CCSD method - Ghosh, Aryya; Pal, Sourav; Vaval, Nayana (Molecular Physics, 2013)
The equation-of-motion coupled-cluster method along with the complex absorbing potential has been applied to study the interatomic Coulombic decay mechanism in hydrogen-bonded clusters. We have applied this method to calculate the lifetime of the F 2s inner-valence ionised state of (HF)(n) (n = 2-3) clusters. The lifetime is found to be very short and decreases substantially with increasing the number of HF monomer.
Keywords: complex absorbing potential (CAP); equation-of-motion coupled-cluster (EOM-CC); HF clusters; interatomic Coulombic decay (ICD)

Isolation, purification and characterization of vinblastine and vincristine from endophytic fungus fusarium oxysporum isolated from catharanthus roseus - Kumar, Ashutosh; Patil, Deepak; Rajamohanan, Pattuparambil Ramanpillai; Ahmad, Absar (Plos One, 2013)
Endophytic fungi reside in a symbiotic fashion inside their host plants, mimic their chemistry and interestingly, produce the same natural products as their hosts and are thus being screened for the production of valuable compounds like taxol, camptothecin, podophyllotoxin, etc. Vinblastine and vincristine are excellent anti-cancer drugs but their current production using plants is non-abundant and expensive. In order to make these drugs readily available to the patients at affordable prices, we isolated the endophytic fungi from Catharanthus roseus plant and found a fungus AA-CRL-6 which produces vinblastine and vincristine in appreciable amounts. These drugs were purified by TLC and HPLC and characterized using UV-Vis spectroscopy, ESI-MS, MS/MS and H-1 NMR. One liter of culture filtrate yielded 76 mu g and 67 mu g of vinblastine and vincristine respectively. This endophytic fungal strain was identified as Fusarium oxysporum based upon its cultural and morphological characteristics and internal transcribed spacer (ITS) sequence analysis.

Is it possible to change wettability of hydrophilic surface by changing its roughness? - Pandey, Prithvi Raj; Roy, Sudip (Journal of Physical Chemistry Letters, 2013)
Wetting behavior of model rough surfaces made of hydrophilic square pillars is investigated. The hydrophilic pillars are equally spaced on hydrophilic surface. The surface roughnesses are altered by varying the pillar width and interpillar spacing. Wetting to dewetting transition is observed for these surfaces. This is one of the first accounts of observation from molecular simulations where hydrophilic surface converts into hydrophobic by changing its roughness. The extent of hydrophilicities are also changed to gain more insightful observations. Energies of the wetting to dewetting transitions are analyzed by calculating the contribution from water water and water surface energy components. A correlation between energy and the wetting to dewetting transition has been established, which rationally explains the observed water repellent nature of hydrophilic surface as a function of roughness.

Lagrange multiplier approach for excited state properties through intermediate hamiltonian formulation of fock space multireference coupled-cluster theory - Gupta, Jitendra; Vaval, Nayana; Pal, Sourav (Journal of Chemical Physics, 2013)
In this paper, we present a formulation based on Lagrange multiplier approach for efficient evaluation of excited state energy derivatives in Fock space coupled cluster theory within the intermediate Hamiltonian framework. The formulation is applied to derive the explicit generic expressions up to second order energy derivatives for [1, 1] sector of Fock space with singles and doubles approximation. Its advantage, efficiency, and interconnection in comparison to the Lagrange multiplier approach in traditional formulation of Fock space, which is built on the concept of Bloch equation based effective Hamiltonian, has been discussed. Computational strategy for their implementation has also been discussed in some detail. (C) 2013 AIP Publishing LLC.

Lavandula gibsoni and plectranthus mollis essential oils: chemical analysis and insect control activities against aedes aegypti, anopheles sfttephensi and culex quinquefasciatus - Kulkarni, Roshan R.; Pawar, Pushpa V.; Joseph, Mary P.; Akulwad, Ambadas K.; Sen, Avalokiteswar; Joshi, Swati P. (Journal of Pest Science, 2013)
Essential oils and acetone extracts from Lavandula gibsoni and Plectranthus mollis, family Lamiaceae, were investigated for their mosquito larvicidal activity against 4th instar larvae of Aedes aegypti, Anopheles stephensi and Culex quinquefasciatus. LC50 values against these three species were 48.3, 62.8 and 54.7 mg/L for L. gibsoni essential oil and 118.5, 137.2 and 128.1 mg/L, respectively, for its acetone extract, while LC50 values for P. mollis essential oil were 25.4, 33.5 and 29.5 mg/L and 195.0, 213.8 and 209.0 mg/L, respectively, for its acetone extract. Repellence of the essential oils was assessed against A. aegypti adults. L. gibsoni essential oil provided 100 % protection for more than 7 h at a concentration of 2.0 mg/cm(2). Under the same conditions, the standard repellent N,N-diethyl-meta-toluamide, at 0.25 mg/cm(2), provided 100 % protection for more than 8 h, while P. mollis essential oil was only weakly repellent. The major components from both essential oils were identified based on GC-MS analysis and linear retention indices. Our results demonstrated promising larvicidal activities of both essential oils against these mosquito species. L. gibsoni essential oil also showed promising repellent activity.
Keywords: Essential oil; Lavandula gibsoni; Mosquito larvicidal activity; Mosquito repellent; Plectranthus mollis

Liquefied petroleum gas sensing performance of cerium doped copper ferrite - Khandekar, M. S.; Tarwal, N. L.; Patil, J. Y.; Shaikh, F. I.; Mulla, Imtiaz S.; Suryavanshi, S. S. (Ceramics International, 2013)
Undoped and cerium (Ce) doped nanocrystalline copper ferrite (CuFe2O4) materials were synthesized via the molten-salt (M-S) method. Effects of Ce doping on the structural, morphological and gas sensing properties of the CuFe2O4 ferrite have been investigated. X-ray diffraction (XRD) analysis revealed the formation of spinel CuFe2O4. Scanning electron microscopy (SEM) and transmission electron microscopy (TEM) investigations showed that the synthesized ferrite is made up of very fine spherical nanoparticles. Moreover, the gas sensing properties of sintered samples were studied towards different reducing gases such as liquefied petroleum gas (LPG), acetone, ethanol and ammonia. The sample with 4% cerium doped CuFe2O4 (Ce4) showed the maximum gas sensitivity (86%) towards LPG with fast response time of 5 s and good recovery time of 68 s. (C) 2013 Elsevier Ltd and Techna Group S.r.l. All rights reserved.
Keywords: Ferrite; Gas sensor; Molten-salt method; TEM

Magnetically separable single-site Ti-Fe3O4@MCM-41 catalyst for selective epoxidation of olefins - Jha, Ajay; Patil, Chetana R.; Garade, Ajit C.; Rode, Chandrashekhar V. (Industrial & Engineering Chemistry Research, 2013)
Magnetically separable Ti-Fe3O4@MCM-41 (Ti-MS) catalysts were prepared by postgrafting Ti with varying loading on mesoporous silica containing dispersed magnetite. The hexagonal structure of Ti-MS catalysts with a periodicity in the pores and a highly ordered hexagonal matrix was established by X-ray diffraction and transmission electron microscopy, while diffuse reflectance UV showed the isolated tetrahedral Ti species coordinated with O2-. From the Fourier transform infrared studies, the extent of Ti-O-Si linkage was found to increase with increase in Ti-loading from 1 to 5 wt %beyond which (10%), the intensity of Ti-O-Si band decreased due to the polymerization of the Ti on the silica surface. Silanol groups on the surface of silica interact with the precursor Ti((OPr)-Pr-i)(4) to give site isolated tetrahedral Ti-species responsible for complete selectivity to the epoxide in the epoxidation of cyclooctene. The magnetic property facilitated easy recovery of the catalyst for its successful eight recycles showing its stability under reaction conditions.

Mapping ion-induced mesophasic transformation in lyotropic in situ gelling system and its correlation with pharmaceutical performance - Patil, Sharvil S.; Venugopal, Edakkal; Bhat, Suresh K.; Mahadik, Kakasaheb R.; Paradkar, Anant R. (Pharmaceutical Research, 2013)
To investigate influence of ion induced mesophasic transformation on pharmaceutical performance of in situ gelling system consisting of glyceryl monooleate. The prepared system showed mesophasic transformation during its conversion from sol to gel upon controlled hydration. The process of mesophasic transformation was studied by SAXS, DSC, rheology and plane polarized light microscopy. Further the influence of additives i.e. naproxen salts (sodium and potassium) and naproxen (base) on the process of mesophasic transformation was also elucidated. It was observed that addition of salt form of naproxen transformed W/O emulsions into cubic mesophase whereas addition of base form of naproxen formed reverse hexagonal (H-II) phase upon controlled hydration. The cubic mesophase formed by naproxen salts retarded the drug release for initial 3 h whereas H-II phase showed sustained drug release characteristics for naproxen base following Higuchi drug release kinetics. The current work suggests that formulations with tailor made pharmaceutical performance can be developed by selecting proper additives in the system so as to obtain the desired mesophase `on demand' thereby controlling drug release characteristics.
Keywords: cubic phase; hexagonal phase; liquid crystal; mesophasic transformation; sustained drug release

Mechanism of action of novel synthetic dodecapeptides against Candida albicans - Maurya, Indresh Kumar; Thota, Chaitanya Kumar; Sharma, Jyotsna; Tupe, Santosh Genba; Chaudhary, Preeti; Singh, Manoj Kumar; Thakur, Indu Shekhar; Deshpande, Mukund V.; Prasad, Rajendra; Chauhan, Virander Singh (Biochimica Et Biophysica Acta-General Subjects, 2013)
Background: Three de novo designed low molecular weight cationic peptides (IJ2, IJ3 and IJ4) containing an unnatural amino acid alpha,beta-didehydrophenylalanine (APhe) exhibited potent antifungal activity against fluconazole (FLC) sensitive and resistant clinical isolates of Candida albicans as well as non-albi cans and other yeast and filamentous pathogenic fungi. In the present study, their synthesis, susceptibility of different fungi and the mechanism of anti-candidal action have been elucidated. Methods: The antimicrobial peptides (AMPs) were synthesized by solid-phase method and checked for antifungal activity against different yeasts and fungi by broth microdilution method. Anti-candidal mode of action of the peptides was investigated through detecting membrane permeabilization by confocal microscopy, Reactive Oxygen Species (ROS) generation by fluorometry, apoptosis and necrosis by flow cytometry and cell wall damage using Scanning and Transmission Electron Microscopy. Results and conclusions: The MIC of the peptides against C. albicans and other yeast and filamentous fungal pathogens ranged between 3.91 and 250 mu M. All three peptides exhibited effect on multiple targets in C. albi cans including disruption of cell wall structures, compromised cell membrane permeability leading to their enhanced entry into the cells, accumulation of ROS and induction of apoptosis. The peptides also showed synergistic effect when used in combination with fluconazole (FLC) and caspofungin (CAS) against C. albi cans. General significance: The study suggests that the AMPs alone or in combination with conventional antifungals hold promise for the control of fungal pathogens, and need to be further explored for treatment of fungal infections. (C) 2013 Elsevier By. All rights reserved.
Keywords: Antifungal peptide; Antimicrobial peptide (AMP); Apoptosis; Candida albicans; Reactive Oxygen Species (ROS)

Microbial oxidation of medium chain fatty alcohol in the synthesis of sophorolipids by candida bombicola and its physicochemical characterization - Pulate, Vrushali Dengle; Bhagwat, Sunil S.; Prabhune, Asmita Ashutosh (Journal of Surfactants and Detergents, 2013)
Sophorolipids (SL) are glycolipid biosurfactants abundantly produced from different feedstocks by yeasts and have been widely developed for various applications. The amphipathic structures of sophorolipids imparts to them surfactant type properties. These biosurfactants are readily isolated in high yield and are nontoxic and biodegradable, which make them industrially interesting as surfactants or emulsifiers. Sophorolipid production was carried out using glucose as a hydrophilic source and lauryl alcohol C12-14, as a hydrophobic source by Candida bombicola (ATCC 22214). Process economics and environmental attractiveness was increased by using a low cost substrate. Optimization studies were carried out where the effect of glucose concentration, pH, temperature and metal ions on sophorolipid production was studied. Optimum production of sophorolipid obtained using lauryl alcohol (SLLA) was achieved after 96 h, the initial pH of the medium was 6.0 with 10 % glucose at 30 A degrees C. Primary characterization of SLLA was done by FTIR. The SLLA showed high physicochemical properties in terms of the surface activities when compared with synthetic surfactants including dodecyl tetraethylene glycol ether and sodium lauryl sulfate. The surface tension of SLLA thus obtained was found to be 24 mN/m with a critical micellar concentration (CMC) value of 0.68 mg/L. Antimicrobial testing showed that SLLA have potent antimicrobial activity against both gram negative bacteria, Escherichia coli (ATCC 8739) and gram positive cocci, Staphylococcus aureuss (ATCC 2079).
Keywords: Biosurfactants; Candida bombicola; CMC; Lauryl alcohol C12-14; sophorolipids; Surface tension

Mixed Co-Mn oxide-catalysed selective aerobic oxidation of vanillyl alcohol to vanillin in base-free conditions - Jha, Ajay; Patil, Kashinath R.; Rode, Chandrashekhar V. (Chempluschem, 2013)
Manganese-doped cobalt mixed oxide (MnCo-MO) catalyst was prepared by a solvothermal method. The as-prepared catalyst was characterised by X-ray photoelectron spectroscopy, H-2 temperature-programmed reduction, O-2 temperature-programmed oxidation and XRD. This catalyst gave 62% conversion with 83% selectivity to vanillin in 2hours for the liquid-phase air oxidation of vanillyl alcohol without using base. Three different types of metal oxides were observed in the prepared catalyst, which could be identified as Co3O4, Mn3O4 and CoMn2O4. Among these, the tetragonal phase of CoMn2O4 was found to be more active and selective for vanillyl alcohol oxidation than Co3O4 and Mn3O4. High-resolution TEM characterisation revealed the morphology of MnCo-MO nanorods with a particle size of 10nm. Successful recycling of the catalyst was also established in this oxidation reaction.
Keywords: aerobic oxidation; cobalt; heterogeneous catalysis; manganese; spinel phases

Multicomponent reactions involving arynes, quinolines, and aldehydes - Bhunia, Anup; Porwal, Digvijay; Gonnade, Rajesh G.; Biju, Akkattu T. (Organic Letters, 2013)
The multicomponent reaction involving arynes, quinolines, and aldehydes leading to the diastereoselective synthesis of benzoxazino quinoline derivatives in good yields proceeding via 1,4-zwitterionic intermediates is reported. In addition, the synthetic potential of various carbonyl compounds in this reaction as well as the utility of isoquinoline as the nucleophilic trigger has been examined.

Necking in extrusion film casting: the role of macromolecular architecture - Pol, Harshawardhan V.; Thete, Sumeet Suresh; Doshi, Pankaj; Lele, Ashish K. (Journal of Rheology, 2013)
Extrusion film casting (EFC) is used on an industrial scale to produce several thousand tons of polymer films and coatings. While significant research has been carried out on necking of films of viscoelastic melts in EFC, the influence of macromolecular chain architecture on the necking behavior is not yet fully understood. In the present research, we have explored experimentally and theoretically the effects of long chain branching and molecular weight distribution on the extent of necking during EFC. Polyethylenes of essentially linear architecture but having narrow and broad molecular weight distributions, and polyethylenes having long chain branching were used for experimental studies. The EFC process was analyzed using the one-dimensional flow model of Silagy et al. [Polym. Eng. Sci. 36(21), 2614-2625 (1996)] in which multimode molecular constitutive equations namely the ``extended pom-pom'' equation (for long chain branched polymer melts) and the ``Rolie-Poly (Rouse linear entangled polymers)'' equation (for linear polymer melts) were incorporated. We show that the model qualitatively captures the salient features of the experimental data thereby elucidating the role of chain architecture on the extent of necking. (C) 2013 The Society of Rheology. [http://dx.doi.org/10.1122/1.4788911]

New dipyranocoumarin from the leaves of calophyllum apetalum willd - Joshi, Swati P.; Kulkarni, Smita R.; Phalgune, Usha D.; Puranik, Vedavati G. (Natural Product Research, 2013)
A new dipyranocoumarin, -hydroxytomentolide A (1) was isolated from the leaves of Calophyllum apetalum together with the known compounds friedelin (2), apetalactone (3), inophyllum C (4) and canophyllol (5). The structure of the new compound was established by spectroscopic studies which include H-1 NMR, C-13 NMR, NOESY, HetCOSY, COLOC experiments and single crystal X-ray diffraction analysis.
Keywords: -hydroxytomentolide A; Calophyllum apetalum; dipyranocoumarins; Guttiferae; Triterpenoids

New organosoluble aromatic poly(esterimide)s containing pendent pentadecyl chains: synthesis and characterization - Sadavarte, Nilakshi V.; Patil, Sachin S.; Avadhani, C. V.; Wadgaonkar, Prakash P. (High Performance Polymers, 2013)
A new diimide dicarboxylic acid, namely 2,2-(4-pentadecyl-1,3-phenylene)bis(1,3-dioxoisoindoline-5-carboxylic acid), containing preformed imide rings and pentadecyl chain, was synthesized by the reaction of 4-pentadecylbenzene-1,3-diamine with trimellitic anhydride. A series of new aromatic poly(esterimide)s (PEIs) was synthesized using diphenylchlorophosphate-activated direct polycondensation of 2,2-(4-pentadecyl-1,3-phenylene)bis(1,3-dioxoisoindoline-5-carboxylic acid), with five commercially available bisphenols, namely 4,4-isopropylidenediphenol (I), 4,4-(hexafluoroisopropylidene)diphenol (II), 4,4-oxydiphenol (III), 4,4-biphenol (IV), and 4,4-(9-fluorenylidene)diphenol (V) in the presence of pyridine and lithium chloride. Inherent viscosities of PEIs were in the range 0.54-0.83dLg(-1) in chloroform (CHCl3) at 30 +/- 0.1 degrees C. PEIs containing pendent pentadecyl chains were soluble in organic solvents such as CHCl3, m-cresol, N, N-dimethylacetamide, 1-methyl-2-pyrrolidinone, pyridine, and nitrobenzene. Tough, transparent, and flexible films of PEIs could be cast from their CHCl3 solutions. PEIs exhibited glass transition temperature in the range 145-198 degrees C. The temperature at 10% weight loss of PEIs, determined by thermogravimetric analysis under the nitrogen atmosphere, was in the range of 450-470 degrees C indicating good thermal stability.
Keywords: pendent pentadecyl chains; Polycondensation; Polyimide; Preformed imide rings; Thermogravimetric analysis

NHC-Catalyzed reaction of enals with hydroxy chalcones: diastereoselective synthesis of functionalized coumarins - Bhunia, Anup; Patra, Atanu; Puranik, Vedavati G.; Biju, Akkattu T. (Organic Letters, 2013)
The N-heterocyclic carbene-catalyzed annulation of enals with 2'-hydroxy chalcones afford cyclopentane-fused coumarin derivatives with an excellent level of diastereocontrol. The reaction tolerates a broad range of functional groups; 25 examples are given, and a preliminary mechanistic investigation is provided.

Novel and efficient synthesis of azaarene-substituted 3-hydroxy-2-oxindoles via sp(3) C-H functionalization of 2-methyl azaarenes and (2-azaaryl)methanes over a heterogeneous, reusable silica-supported dodecatungstophosphoric acid catalyst - Mulla, Shafeek Abdul Rashid; Pathan, Mohsinkhan Y.; Chavan, Santosh S. (RSC Advances, 2013)
A novel and efficient protocol has been developed for the synthesis of azaarene-substituted 3-hydroxy-2-oxindoles via sp(3) C-H functionalization of 2-methyl azaarenes and (2-azaaryl)methanes with isatin in good to excellent yield. This is the first example in which heterogeneous, reusable silica supported dodecatungstophosphoric acid (DTP/SiO2) catalyzed sp(3) C-H functionalization of 2-substituted azaarenes and (2-azaaryl)methanes.

Novel green bio-milling technique for the synthesis of BaTiO3 nanoparticle using Saccharomyces cerevisiae - Uddin, Imran; Jaiswal, Adhish; Poddar, Pankaj (International Journal of Innovative Biological Research, 2013)
The development of a novel green top-down approach called bio-milling for synthesizing the oxide nanomaterials is an issue of topical interest. While a number of chemical processes are energy intensive and involve toxic chemicals. Here we report, at room temperature, bio-milling of chemically synthesized barium titinate (BaTiO3) particles by challenging the fungus Saccharomyces cerevisiae against aqueous solution of BaTiO3 to synthesize the biogenic nanoparticles. The extracellular breaking of microscaled BaTiO3 particles by extracellular biomolecules/proteins secreted by the fungus under stressed condition results in the formation of particles in nanoregime. XRD spectra and TEM analysis showed that BaTiO3 particles reduce to their size during the interaction with the fungus Saccharomyces cerevisiae and maintaining their phase and crystallinity after bio-milling process.

Novel mechanism for antiglycative action of limonene through stabilization of protein conformation - Joglekar, Madhav M.; Panaskar, Shrimant N.; Chougale, Ashok D.; Kulkarni, Mahesh J.; Arvindekar, Akalpita U. (Molecular Biosystems, 2013)
Inhibition of protein glycation is known to ameliorate secondary complications in diabetes. In the present study antiglycative properties of limonene, a natural product, were evaluated using BSA as a model protein. AMG (aminoguanidine) was used as a positive control. Measurement of total AGEs (Advanced Glycation End-products) and specific AGEs revealed that limonene could inhibit protein glycation to the extent of 56.3% and 75.1% respectively at 50 mu M concentration as against 54.4% and 82.2% by AMG at 1 mM. Congo red binding and CD (Circular Dichroism) analysis revealed inhibition of alpha-helix to beta-sheet transition wherein 18.5% beta-sheet structures were observed in glycated BSA (bovine serum albumin) as against 4.9% with limonene. Glycation of protein in the presence of urea was enhanced by 18%, while in the presence of limonene it was reduced by 23% revealing the stabilizing effect of limonene. Electrophoretic mobility was similar to the normal control and a zeta potential value of -12.1 mV as against -15.1 mV in diabetic control was observed. Inhibition of glycation in limonene treated samples was confirmed through LC-MS analysis wherein AGEs such as pentosidine, CML (N-epsilon-(carboxymethyl)lysine), CEL (N-epsilon-(carboxyethyl) lysine), MOLD (methylglyoxal-lysine dimer) and imidazolone observed in glycated samples were absent in limonene treated samples. PatchDock studies revealed that limonene could bind to the major glycation sites IB, IIA and IIB sub domains and AMG to the IIIA sub domain. Thus limonene is a potent protein glycation inhibitor that prevents protein glycation through a novel mechanism of stabilization of protein structure through hydrophobic interactions.

One pot solvent free synthesis and in vitro antitubercular screening of 3-aracylphthalides against mycobacterium tuberculosis - Limaye, Rohan A.; Kumbhar, Virendra B.; Natu, Arun D.; Paradkar, Madhusudan V.; Honmore, Varsha S.; Chauhan, Rubia R.; Gample, Suvarna P.; Sarkar, Dhiman (Bioorganic & Medicinal Chemistry Letters, 2013)
One pot synthesis of 3-Aracylphthalide was accomplished in good yield by reacting 2-carboxy benzaldehyde with various aromatic methyl ketones in presence of methane sulphonic acid. Various phthalides thus obtained were characterized with spectral techniques. These phthalides were subjected to in vitro antitubercular screening against Mycobacterium tuberculosis H37Ra (MTB) by using XRMA protocol. Among the phthalides screened, four exhibited half maximal inhibitory concentration (IC50) in the range of 0.81-1.24 mu g/ml thereby providing potential lead compounds for future drug discovery studies. (c) 2012 Elsevier Ltd. All rights reserved.
Keywords: 3-Aracylphthalide; Antitubercular activity; Methane sulphonic acid; One pot synthesis

One pot synthesis, growth mechanism and optical properties of Zn1-xCdxSe graded core/shell and alloy nanocrystals - Sonawane, Kiran G.; Patil, K. R.; Mahamuni, Shailaja (Journal of Luminescence, 2013)
Comparatively higher photoluminescence yield along with robustness of core/shell semiconductor nanocrystals make them attractive candidates for studying intricate quantum size effects. Here, we report, one pot synthesis of Zn1-xCdxSe graded core/shell structures by exploiting change in the reactivity of precursors. Optical and structural measurements indicate formation of graded structure. Growth mechanism probed by inductively coupled plasma atomic emission spectroscopy shows formation of graded core/shell structure, with CdSe rich core and ZnSe rich shell. Annealing these nanocrystals, in chemical bath, leads to diffusion of Cd from core to shell region. Formation of Zn1-xCdxSe alloy is also observed in X-ray photoelectron spectroscopic measurements, confirming the diffusion of Cd from core to shell region. Substantially high photoluminescence quantum efficiency of 60% with narrow line width of about 27 nm, was observed and is attributable to the reduced strain due to graded core/shell structure. (C) 2012 Elsevier B.V. All rights reserved.
Keywords: Graded core/shell; II-VI Semiconductor; Luminescence; Optical properties; Semiconductor alloy

One-pot fluorescent labeling protocol for complex hydroxylated bioactive natural products - Haldar, Saikat; Kumar, Santosh; Kolet, Swati P.; Patil, Harshal S.; Kumar, Dhiraj; Kundu, Gopal C.; Thulasiram, Hirekodathakallu V. (Journal of Organic Chemistry, 2013)
Tagging of small bioactive molecules with a fluorophore is a highly sensitive method to trace their cellular activities through real-time visual information. Here we disclose a 7-nitrobenzo-2-oxa-1,3-diazole (NBD)-based, high-yielding, one-pot labeling protocol for hydroxylated molecules using Yamaguchi coupling as the key reaction. This methodology was successfully applied on several sensitive and complex hydroxylated bioactive compounds including 7-deacetylazadiradione, simvastatin, camptothecin, andrographolide, cinchonine, beta-dihydroartemisinin, and azadirachtin A. Further, utility of this protocol was illustrated on the cytotoxic activity of azadiradione derivatives against several cancer cell lines through cell imaging of two qualified fluorescent probes.

One-step method for the synthesis of aryl olefins from aryl aldehydes and aliphatic aldehydes - Borate, Hanumant B.; Gaikwad, Supriya H.; Kudale, Ananada S.; Chavan, Subhash P.; Pharande, Shrikant G.; Wagh, Vitthal D.; Sawant, Vikram S. (Tetrahedron Letters, 2013)
A conceptually new one-step reaction affording unexpected aryl olefinic product from aromatic aldehyde, aliphatic aldehyde and malononitrile in the presence of acetic acid-ammonium acetate under mild reaction conditions without using any metal catalyst is reported. This novel reaction was used to prepare a number of substituted aryl olefins including new molecules. (c) 2013 Elsevier Ltd. All rights reserved.
Keywords: Aliphatic aldehyde; Aromatic aldehyde; Aryl olefin; Dicyanoaniline; Malononitrile

Orientation of the beta-hydroxyl group controls the diastereoselectivity during the hydride reduction and grignard reaction of inososes - Jagdhane, Rajendra C.; Patil, Madhuri T.; Krishnaswamy, Shobhana; Shashidhar, Mysore S. (Tetrahedron, 2013)
A comparison of the results of the Grignard reaction and the hydride reduction of the carbonyl group of epi- and scyllo-inososes reveals that the extent of diastereoselectivity of these reactions is decided by the orientation of the beta-hydroxyl group (or its derivative). Presence of an axial beta-hydroxyl group generally results in the formation of relatively larger amount of the axial alcohol as a result of the reduction of the carbonyl group. The possible reasons for the observed differences in diastereoselectivity between the reactions of these isomeric epi- and scyllo-inososes have been discussed. The sequence of reactions reported here provides convenient access to C-allcylated inositols, such as iso-laminitol and iso-mytilitol as well as 2-O-methyl epi-inositol, an epimer of the naturally occurring ononitol. (C) 2013 Elsevier Ltd. All rights reserved.
Keywords: Cyclitol; diastereoselectivity; Grignard; Inositol; Nucleophile; reduction

Orthanilic acid-promoted reverse turn formation in peptides - Kale, Sangram S.; Priya, Gowri; Kotmale, Amol S.; Gawade, Rupesh L.; Puranik, Vedavati G.; Rajamohanan, P. R.; Sanjayan, Gangadhar J. (Chemical Communications, 2013)
Orthanilic acid (2-aminobenzenesulfonic acid, (S)Ant), an aromatic beta-amino acid, has been shown to be highly useful in inducing a folded conformation in peptides. When incorporated into peptide sequences (Xaa-(S)Ant-Yaa), this rigid aromatic beta-amino acid strongly imparts a reverse-turn conformation to the peptide backbone, featuring robust 11-membered-ring hydrogen-bonding.

Oxidoreductase from `Alphonso' mango catalyzing biosynthesis of furaneol and reduction of reactive carbonyls - Kulkarni, Ram; Chidley, Hemangi G.; Deshpande, Ashish; Schmidt, Axel; Pujari, Keshav; Giri, Ashok P.; Gershenzon, Jonathan; Gupta, Vidya (SpringerPlus, 2013)
Two furanones, furaneol (4-hydroxy-2,5-dimethyl-3(2H)-furanone) and mesifuran (2,5-dimethyl-4-methoxy-3(2H)-furanone), are important constituents of flavor of the Alphonso cultivar of mango (Mangifera indica). To get insights into the biosynthesis of these furanones, we isolated an enone oxidoreductase gene from the Alphonso mango. It has high sequence similarity to an alkenal/one oxidoreductase from cucumber (79% identity) and enone oxidoreductases from tomato (73% identity) and strawberry (72% identity). The complete open reading frame was expressed in E. coli and the (his) 6-tagged recombinant protein was purified by affinity chromatography. The purified protein assayed with NADH as a reducing agent converted D-fructose-1,6-diphosphate into furaneol, the immediate precursor of mesifuran. The enzyme was also able to convert two highly reactive carbonyls, 3-buten-2-one and 1-penten-3-one, produced by lipid peroxidation in plants, into their saturated derivatives. Expression profiling in various ripening stages of Alphonso fruits depicted an expression maxima at 10 days after harvest stage, shortly before the appearance of the maximum amount of furanones (completely ripe stage, 15 days after harvest). Although no furanones were detected at the 0 day after harvest stage, significant expression of this gene was detected in the fruits at this stage. Overall, the results suggest that this oxidoreductase plays important roles in Alphonso mango fruits.
Keywords: Detoxification; Enone oxidoreductase; Flavor; Mangifera indica; Ripening

Palladium-promoted [2+2+2] cocyclization of arynes and unsymmetrical conjugated dienes: synthesis of justicidin B and retrojusticidin B - Patel, Ramesh M.; N. P. Argade (Organic Letters, 2013)
A facile synthesis of natural and unnatural arylnaphthalenes has been demonstrated via the unprecedented palladium-promoted [2 + 2 + 2] cocyclization of arynes and unsymmetrical conjugated dienes using the N-heterocyclic carbene as a ligand. The unsymmetrical dienes used herein are actually alpha-coupled acrylate - cinnamate combinations bearing two beta-positive carbons and follow the key [2 + 2 + 2] cocyclization pathway.

Performance of the EOMIP-CCSD(2) method for determining the structure and properties of doublet radicals: a benchmark investigation - Dutta, Achintya Kumar; Vaval, Nayana; Pal, Sourav (Journal of Chemical Theory and Computation, 2013)
We present a benchmark study on the performance of the EOMIP-CCSD(2) method for computation of structure and properties of doublet radicals. The EOMIP-CCSD(2) method is a second-order approximation to the standard EOMIP-CCSD method. By retaining the black box nature of the standard EOMIP-CCSD method and adding favorable N-5 scaling, the EOMIP-CCSD(2) method can become the method of choice for predicting the structure and spectroscopic properties of large doublet radicals. The EOMIP-CCSD(2) method overcomes the typical problems associated with the standard single reference ab initio treatment of doublet radicals. We compare our results for geometries and harmonic vibrational frequencies with those obtained using the standard EOMIP-CCSD method, as well as unrestricted Hartree-Fock (UHF)- and restricted open-shell Hartree-Fock (ROHF)-based single-reference coupled-cluster and second order many-body perturbation theory (MBPT(2)) methods. The effect of the basis set on the quality of the results has been studied using a hierarchy of Dunning's correlation-consistent aug-cc-pVXZ (X = D, T, Q) basis sets. Numerical results show that the EOMIP-CCSD(2) method, despite its N-5 scaling, gives better agreement with experimental results, compared to the UHF- and ROHF-based MBPT(2), as well as the single-reference coupled-cluster methods.

Perturbative approximations to single and double spin flip equation of motion coupled cluster singles doubles methods - Dutta, Achintya Kumar; Pal, Sourav; Ghosh, Debashree (Journal of Chemical Physics, 2013)
Spin flip equation of motion coupled cluster (EOM-SF-CC) can correctly treat situations involving electronic degeneracies or near degeneracies, e. g., bond breaking, di- and tri-radicals, etc. However, for large systems EOM-SF-CC (even in single and double excitations) is computationally prohibitively expensive. Therefore, earlier approximations to EOM-SF-CC methods such as spin flip configuration interaction singles with perturbative doubles (SF-CIS(D)) have been proposed. In this work, we present a new perturbative approximation to EOM-SF-CC, which has been found to be more accurate than SF-CIS(D). The capabilities, advantages, and timings of the new approach have been demonstrated considering the singlet-triplet gaps in di- and triradicals as well as bond breaking examples. The method is extended to double spin flip EOM-CC and its capabilities have been tested. (C) 2013 AIP Publishing LLC.

Photopolymerization of bis-aromatic and alicyclic based solid urethane acrylate macromonomer in the presence of large excess of reactive diluent Kinetics and modeling - Harikrishna, Reghunathan; Ponrathnam, S.; Rajan, C. R.; Tambe, S. S. (Journal of Thermal Analysis and Calorimetry, 2013)
A solid urethane acrylate macromonomer with bis-aromatic as well as alicyclic moieties was synthesized and the kinetics of photopolymerization reactions were studied in the presence of varying concentration of photoinitiator and large excess of reactive diluent using photo DSC. The studies show that the rate of maximum polymerization was found to increase with increase in concentration of photoinitiator while a decrease was observed by an increase in temperature. The final conversion showed a decrease at highest isothermal condition due to vitrification. Estimation of kinetic parameters including applicability of autocatalytic and modified autocatalytic models were investigated by nonlinear regression. It was observed that the modified models gave a better fit with the experimental data and kinetic parameters showed a decrease with increase in temperature and an increase with increase in concentration of photoinitiator.
Keywords: Autocatalytic model; kinetics; Levenberg-Marquardt method; Photopolymerization

Polarizability of few electron quantum dots: extended coupled-cluster response approach - Heidari, Ideh; Vaval, Nayana; Pal, Sourav; Kanhere, Dilip G. (Chemical Physics Letters, 2013)
The dipole polarizability is studied for few electron quantum dots using extended coupled cluster linear response method (ECCLR). The polarizability of pure parabolic quantum dots depends only on the number of electrons and the parabolic confinement strength. We added impurity in a GAUSSIAN form to the external parabolic potential and used ECCLR to calculate polarizability. To examine the effect of external potential, we changed the parabolic confinement to square-well and repeated all calculations. We mainly looked at eigenvalue spectrum and charge density specially when the system shifts towards lower density regions. (C) 2012 Elsevier B. V. All rights reserved.

Porous carbons from nonporous MOFs: influence of ligand characteristics on intrinsic properties of end carbon - Aiyappa, Harshitha Barike; Pachfule, Pradip; Banerjee, Rahul; Kurungot, Sreekumar (Crystal Growth & Design, 2013)
Synthesis of porous carbons on direct carbonization of nonporous Zn-based MOFs has been achieved without using any additional carbon precursor. The effect of ligand nature on the resulting carbon porosity has been studied systematically using the MOFs synthesized from rigid and flexible ligands. The linear relations between Zn/C ratio of the MOF versus surface area of the resulting carbon, micro-porosity versus H-2 uptake achieved in these carbons, and surface area versus specific capacitance of the end carbons have been verified from the gas adsorption, molecular composition, and electrochemical studies, respectively. Cyclic voltammetry and charge-discharge cycling have been carried out to study the capacitive behavior of the carbons. The interdependence of capacitive behavior on the surface area has been analyzed using data derived from N-2 adsorption isotherms and charge-discharge curves. Among the carbons synthesized, C-MOF-2 shows maximal surface area of 1378 m(2)/g with a specific capacitance of 170 F/g at 1 A/g.

Porous Co3O4 nanorods as superior electrode material for supercapacitors and rechargeable Li-ion batteries - Vijayanand, S.; Kannan, Ramaiyan; Potdar, H. S.; Pillai, V. K.; Joy, Pattayil Alias (Journal of Applied Electrochemistry, 2013)
Porous aggregated nanorods of Co3O4 with a surface area of similar to 100 m(2) g(-1) synthesized without using any templates or surfactants give very high specific capacitance of similar to 780 F g(-1) when used as electrode in a faradaic supercapacitor, with a cycle life of more than 1,000 cycles. Further, in Li-ion batteries when used as an anode, the Co3O4 nanorods achieved a capacity of 1155 mA h g(-1) in the first cycle and upon further cycling it is stabilized at 820 mA h g(-1) for more than 25 cycles. Detailed characterization indicated the stability of the material and the improved performance is attributed to the shorter Li-insertion/desertion pathways offered by the highly porous nanostructures. The environmentally benign and easily scalable method of synthesis of the porous Co3O4 nanorods coupled with the superior electrode characteristics in supercapacitors and Li-ion batteries provide efficient energy storage capabilities with promising applications.
Keywords: Cobalt oxide; Electrode materials; Li-ion battery; Porous nanostructures; supercapacitor

Porous-organic-framework-templated nitrogen-rich porous carbon as a more proficient electrocatalyst than Pt/C for the electrochemical reduction of oxygen - Pachfule, Pradip; Dhavale, Vishal M.; Kandambeth, Sharath; Kurungot, Sreekumar; Banerjee, Rahul (Chemistry-A European Journal, 2013)
Porous nitrogen-rich carbon (POF-C-1000) that was synthesized by using a porous organic framework (POF) as a self-sacrificing host template in a nanocasting process possessed a high degree of graphitization in an ordered structural arrangement with large domains and well-ordered arrays of carbon sheets. POF-C-1000 exhibits favorable electrocatalytic activity for the oxygen-reduction reaction (ORR) with a clear positive shift of about 40 mV in the onset potential compared to that of a traditional, commercially available Pt/C catalyst. In addition, irrespective of its moderate surface area (785 m2?g-1), POF-C-1000 showed a reasonable H2 adsorption of 1.6 wt?% (77 K) and a CO2 uptake of 3.5 mmol?g-1 (273 K).
Keywords: Adsorption; Electrochemistry; fuel cells; oxygen-reduction reaction; porous organic frameworks

Probing interaction of Gram-positive and Gram-negative bacterial cells with ZnO nanorods - Jain, Aanchal; Bhargava, Richa; Poddar, Pankaj (Materials Science & Engineering C-Materials for Biological Applications, 2013)
In the present work, the physiological effects of the ZnO nanorods on the Gram positive (Staphylococcus aureus and Bacillus subtilis) and Gram-negative (Escherichia coli and Aerobacter aerogenes) bacterial cells have been studied. The analysis of bacterial growth curves for various concentrations of ZnO nanorods indicates that Gram positive and Gram negative bacterial cells show inhibition at concentrations of similar to 64 and similar to 256 mu g/mL respectively. The marked difference in susceptibility towards nanorods was also validated by spread plate and disk diffusion methods. In addition, the scanning electron micrographs show a clear damage to the cells via changed morphology of the cells from rod to coccoid etc. The confocal optical microscopy images of these cells also demonstrate the reduction in live cell count in the presence of ZnO nanorods. These, results clearly indicate that the antibacterial activity of ZnO nanorods is higher towards Gram positive bacterium than Gram negative bacterium which indicates that the structure of the cell wall might play a major role in the interaction with nanostructured materials and shows high sensitivity to the particle concentration. (C) 2012 Elsevier B.V. All rights reserved.
Keywords: Confocal; Growth curve; Nanorods; SEM; Zeta potential; ZnO

Probing the active site of cinnamoyl CoA reductase 1 (Ll-CCRH1) from Leucaena leucocephala - Sonawane, Prashant; Patel, Krunal; Vishwakarma, Rishi Kishore; Srivastava, Sameer; Singh, Somesh; Gaikwad, Sushama M.; Khan, Bashir Mohammad (International Journal of Biological Macromolecules, 2013)
Lack of three dimensional crystal structure of cinnamoyl CoA reductase (CCR) limits its detailed active site characterization studies. Putative active site residues involved in the substrate/NADPH binding and catalysis for Leucaena leucocephala CCR (Ll-CCRH1; GenBank: DQ986907) were identified by amino acid sequence alignment and homology modeling. Putative active site residues and proximal H215 were subjected for site directed mutagenesis, and mutated enzymes were expressed, purified and assayed to confirm their functional roles. Mutagenesis of S136, Y170 and K174 showed complete loss of activity, indicating their pivotal roles in catalysis. Mutant S212G exhibited the catalytic efficiencies less than 10% of wild type, showing its indirect involvement in substrate binding or catalysis. R51G, D77G, F30V and I31N double mutants showed significant changes in K-m values, specifying their roles in substrate binding. Finally, chemical modification and substrate protection studies corroborated the presence Ser, Tyr, Lys, Arg and carboxylate group at the active site of Ll-CCRH1. (c) 2013 Elsevier B.V. All rights reserved.
Keywords: Chemical modification; Cinnamoyl CoA reductase 1; Docking simulations; homology modeling; Site directed mutagenesis; Substrate protection

Proposing late transition metal complexes as frustrated Lewis pairs - a computational investigation - Pal, Amrita; Vanka, Kumar (Dalton Transactions, 2013)
There has been considerable interest in recent times to develop transition metal complex systems that can demonstrate metal-ligand cooperativity. It has recently been shown (Wass et al., J. Am. Chem. Soc., 2011, 133, 18463) that early transition metals can cooperate with ligands carrying phosphines as pendant groups, working as metal analogues to frustrated Lewis pairs (FLPs) to mediate in a variety of important reactions. What the current work attempts to do is to show how this concept of metal containing FLPs can be expanded to include late transition metal complexes as well: complexes that have been modified from existing systems that serve as efficient catalysts for homogeneous polymerization. A modified palladium complex has been considered in this regard as an example of a potential late transition metal FLP and studied with full quantum mechanical calculations. The calculations indicate that this complex would be effective at catalyzing ammonia borane dehydrogenation. The possibility of competing side reactions such as reductive elimination have also been considered, and it has been found that such processes would also yield stable products which could act as an FLP in catalyzing reactions such as the dehydrogenation of ammonia borane. The current work therefore expands the scope of metal containing FLPs to include late transition metals and demonstrates computationally the potential of such complexes for exhibiting metal-ligand cooperativity.

Proteome wide reduction in AGE modification in streptozotocin induced diabetic mice by hydralazine mediated transglycation - Kesavan, Suresh K.; Bhat, Shweta; Golegaonkar, Sandeep B.; Jagadeeshaprasad, Mashanipalya G.; Deshmukh, Arati B.; Patil, Harshal S.; Bhosale, Santosh D.; Shaikh, Mahemud L.; Thulasiram, Hirekodathakallu V.; Boppana, Ramanamurthy; Kulkarni, Mahesh J. (Scientific Reports, 2013)
The non-enzymatic reaction between glucose and protein can be chemically reversed by transglycation. Here we report the transglycation activity of hydralazine using a newly developed MALDI-TOF-MS based assay. Hydralazine mediated transglycation of HbA1c, plasma proteins and kidney proteins was demonstrated in streptozotocin (STZ) induced diabetic mice, as evidenced by decrease in protein glycation, as well as presence of hydralazine-glucose conjugate in urine of diabetic mice treated with hydralazine. Hydralazine down regulated the expression of Receptor for Advanced Glycation End products (RAGE), NADPH oxidase (NOX), and super oxide dismutase (SOD). These findings will provide a new dimension for developing intervention strategies for the treatment of glycation associated diseases such as diabetes complications, atherosclerosis, and aging.

Quantifying the mechanism of phosphate monoester hydrolysis in aqueous solution by evaluating the relevant Ab initio QM/MM free-energy surfaces - Plotnikoy, Nikolay V.; Prasad, B. Ram; Chakrabarty, Suman; Chu, Zhen T.; Warshel, Arieh (Journal of Physical Chemistry B, 2013)
Understanding the nature of the free-energy surfaces for phosphate hydrolysis is a prerequisite for understanding the corresponding key chemical reactions in biology. Here, the challenge has been to move to careful ab initio QM/MM (QM(ai)/MM) free-energy calculations, where obtaining converging results is very demanding and computationally expensive. This work describes such calculations, focusing on the free-energy surface for the hydrolysis of phosphate monoesters, paying special attention to the comparison between the one water (1W) and two water (2W) paths for the proton-transfer (PT) step. This issue has been explored before by energy minimization with implicit solvent models and by nonsystematic QM/MM energy minimization, as well as by nonsystematic free-energy mapping. However, no study has provided the needed reliable 2D (3D) surfaces that are necessary for reaching concrete conclusions. Here we report a systematic evaluation of the 2D (3D) free-energy maps for several relevant systems, comparing the results of QM(ai)/MM and QM(ai)/implicit solvent surfaces, and provide an advanced description of the relevant energetics. It is found that the 1W path for the hydrolysis of the methyl diphosphate (MDP) trianion is 6-9 kcal/mol higher than that the 2W path. This difference becomes slightly larger in the presence of the Mg2+ ion because this ion reduces the plc of the conjugated acid form of the phosphate oxygen that accepts the proton. Interestingly, the BLYP approach (which has been used extensively in some studies) gives a much smaller difference between the 1W and 2W activation barriers. At any rate, it is worth pointing out that the 2W transition state for the PT is not much higher that the common plateau that serves as the starting point of both the 1W and 2W PT paths. Thus, the calculated catalytic effects of proteins based on the 2W PT mechanistic model are not expected to be different from the catalytic effects predicted using the 1W PT mechanistic model, which was calibrated on the observed barrier in solution and in which the TS charge distribution was similar to the that of the plateau (as was done in all of our previous EVB studies).

Rational design of highly active “hybrid” phosphine-phosphinite pincer iridium catalysts for alkane metathesis - Nawara-Hultzsch, Agnieszka J.; Hackenberg, Jason D.; Punji, Benudhar; Supplee, Carolyn; Emge, Thomas J.; Bailey, Brad C.; Schrock, Richard R.; Brookhart, Maurice; Goldman, Alan S. (ACS Catalysis, 2013)
Both the bisphosphine and bisphosphinite pincer complexes (tBu4PCP)IrH2 and (tBu4POCOP)IrH2 can cocatalyze alkane metathesis in tandem with olefin metathesis catalysts, but the two complexes have different resting states during catalysis, suggesting that different steps are turnover-limiting in each case. This led to the hypothesis that a complex with intermediate properties would be catalytically more active than either of these two species. Accordingly, “hybrid” phosphine–phosphinite pincer ligands (PCOP) and the corresponding iridium complexes were synthesized (3c–e). In tandem with olefin-metathesis catalyst MoF12, (tBu4PCOP)IrH2 displays significantly higher activity for the metathesis of n-hexane than does (tBu4PCP)IrH2 or (tBu4POCOP)IrH2. (tBu2PCOPiPr2)IrH4 (3d) is even more active (>30-fold more active than (tBu4POCOP)IrH2) and affords nearly 4.6 M alkane products after 8 h at 125 °C.

Recent advances in transition-metal-free direct C–C and C–heteroatom bond forming reactions - Mehta, Vaibhav P.; Punji, Benudhar (RSC Advances, 2013)
The efficient generation of biaryl compounds and heterocycles via the advent of the transition-metal-free coupling reaction constitutes an important development in the last few years. Although early methods for the construction of such molecules involved transition metals, recent advances in the field have witnessed a myriad of elegant reports without the use of metal sources. The serendipitous discovery and observation of synthetic chemists have realized that there lies a great potential in exploiting the inherent reactivity of molecules in absence of transition metal. The key to the success of such coupling reactions is the use of a strong base, oxidant and a catalytic amount of N-donor ligands which contribute significantly. This review aims to highlight the recent progress in the field of transition-metal-free direct C–C and C–heteroatom bond forming reactions via the use of a strong base and (or) an oxidant.

Relay catalytic branching cascade: technique to access diverse molecular scaffolds - Patil, Nitin T.; Shinde, Valmik S.; Sridhar, Balasubramanian (Angewandte Chemie International Edition, 2013)

Role of substituents on the reactivity and electron density profile of diimine ligands: a density functional theory based study - Kulkarni, Bhakti S.; Mishra, Deepti; Pal, Sourav (Journal of Chemical Sciences, 2013)
In this paper, we study the reactivity of diimines like 2, 2(')-bipyridine, 1, l0-phenanthroline and 1, 2, 4-triazines using density-based reactivity descriptors. We discuss the enhancement or diminution in the reactivity of these ligands as a function of two substituent groups, namely methyl (-CH3) group and phenyl (-C6H5) group. The global reactivity descriptors explain the global affinity and philicity of these ligands, whereas the local softness depicts the particular site selectivity. The inter-molecular reactivity trends for the same systems are analysed through the philicity and group philicity indices. The sigma-donor character of these ligands is quantified with the help of electron density profile. In addition, the possible strength of interaction of these ligands with metal ions is supported with actual reaction energies of Ru-L complexes.
Keywords: 2; 2 `-bipyridine; DFT; diimine; Reactivity descriptors; Ru-ligand interaction; substituent effects

Seasonal prediction of Indian summer monsoon in NCEP coupled and uncoupled model - Chaudhari, Hemantkumar S.; Pokhrel, Samir; Mohanty, Sachiko; Saha, Subodh K. (Theoretical and Applied Climatology, 2013)
This study has identified probable factors that govern ISMR predictability. Furthermore, extensive analysis has been performed to evaluate factors leading to the predictability aspect of Indian Summer Monsoon Rainfall (ISMR) using uncoupled and coupled version of National Centers for Environmental Prediction Coupled Forecast System (CFS). It has been found that the coupled version (CFS) has outperformed the uncoupled version [Global Forecast System (GFS)] of the model in terms of prediction of rainfall over Indian land points. Even the spatial distribution of rainfall is much better represented in the CFS as compared to that of GFS. Even though these model skills are inadequate for the reliable forecasting of monsoon, it imparts the capacious knowledge about the model fidelity. The mean monsoon features and its evolution in terms of rainfall and large-scale circulation along with the zonal and meridional shear of winds, which govern the strength of the monsoon, are relatively closer to the observation in the CFS as compared to the GFS. Furthermore, sea surface temperature-rainfall relation is fairly realistic and intense in the coupled version of the model (CFS). It is found that the CFS is able to capture El Nio Southern Oscillation ISMR (ENSO-ISMR) teleconnections much strongly as compared to GFS; however, in the case of Indian Ocean Dipole ISMR teleconnections, GFS has the larger say. Coupled models have to be fine-tuned for the prediction of the transition of El Nio as well as the strength of the mature phase has to be improved. Thus, to sum up, CFS tends to have better predictive skill on account of following three factors: (a) better ability to replicate mean features, (b) comparatively better representation of air-sea interactions, and (c) much better portrayal of ENSO-ISMR teleconnections. This study clearly brings out that coupled model is the only way forward for improving the ISMR prediction skill. However, coupled model's spurious representation of SST variability and mean model bias are detrimental in seasonal prediction.

Selective imaging of quorum sensing receptors in bacteria using fluorescent Au nanocluster probes surface functionalized with signal molecules - Mukherji, Ruchira; Samanta, Anupam; Illathvalappil, Rajith; Chowdhury, Somak; Prabhune, Asmita; Devi, R. Nandini (ACS Applied Materials & Interfaces, 2013)
Fluorescent ultrasmall gold clusters decorated with bacterial quorum sensing signal molecules, acyl homoserine lactone, are synthesized. These fluorescent probes are found to have emission in the near-infrared spectral region advantageous for bioimaging. Imaging studies using different. strains of bacteria with and without acyl homoserine lactone receptors with the aid of confocal microscopy have shown that the probe interacts preferentially with cells possessing these receptors. This indicates that, with appropriate surface functionalization, the Au clusters can be used for receptor specific detection with enhanced selectivity.
Keywords: Au nanoclusters; Biosensor; fluorescence imaging; quorum sensing

Self-assembly of modified rhodamine-6G with tri-block copolymer: unusual vesicles formation, pH sensing and dye release properties - Praveen, L.; Saha, Sukdeb; Jewrajka, Suresh K.; Das, Amitava (Journal of Materials Chemistry B, 2013)
A new rhodamine-6G derivative having a C18-alkyl chain self-assembles with an amphiphilic tri-block copolymer and forms stable vesicles in water or in water–ethanol (4 : 1, v/v) medium. The stability of the spirolactam form of the rhodamine-6G derivative in these vesicular structures, along with studies of controlled dye release and pH sensing are discussed. Transmission electron micrographs and DLS analyses confirm the formation of vesicular structures. Atomic force microscopy (AFM) images show that the self assembled tri-block copolymer-octadecyl rhodamine vesicles form near spherical nanostructures with a size ranging from 80 to 110 nm. Furthermore, the vesicular system is disassembled under acidic conditions, releasing the cargo which are an integral part of the vesicle. Dye-release studies showed that the release rates of the loaded dye in the vesicles could be well-controlled as a function of the media pH. These results offer an opportunity to use these nanovesicles as imaging reagents for probing media pH with their simultaneous use as nanocarriers for intracellular drug delivery.

Sequence dependent lipid-mediated effects modulate the dimerization of ErbB2 and its associative mutants - Prasanna, Xavier; Praveen, P. J.; Sengupta, Durba (Physical Chemistry Chemical Physics, 2013)
The association of transmembrane helices is an important event in several biological processes, but the factors governing association, especially the non-specific environmental effects, have still not been elucidated. Here, we use coarse-grain molecular dynamics simulations to study the association of ErbB2 transmembrane helices and three ``oncogenic mutants.'' Self-assembly simulations and the dimerization free-energy profiles confirm an energetically-favorable dimerized state for both the wildtype and the mutants. The dissociation free energy of all three mutants is calculated to be larger than the wildtype peptide. Along with favourable protein-protein interactions, non-specific environmental effects are observed to contribute to the association. In particular, local bilayer thinning along with membrane perturbations are seen around the mutants. The membrane perturbations are reduced upon helix association, suggesting that lipid chain packing is an important driving force for helix dimerization. Our results highlight the importance of both specific as well as non-specific driving forces in the association of transmembrane helices.

Short synthesis of (2S,3S)-3-hydroxypipecolic acid - Chavan, Subhash P.; Harale, Kishor R.; Pawar, Kailash P. (Tetrahedron Letters, 2013)
A convenient synthesis of (2S,3S)-3-hydroxypipecolic acid starting from cheap and abundant L-(+)-tartaric acid has been achieved. The strategy employs selective ester reduction and reductive lactamization as key steps. (C) 2013 Elsevier Ltd. All rights reserved.
Keywords: Reductive lactamization; Selective deprotection; Wittig reaction

Solution and in silico studies on the recombinant lectin from Cicer arietinum seeds - Wakankar, Madhurima S.; Krishnasastry, Musti V.; Jaokar, Tulika M.; Patel, Krunal A.; Gaikwad, Sushama M. (International Journal of Biological Macromolecules, 2013)
The Cicer arietinum seed lectin was cloned and expressed in Escherichia coli and purified in active form. Conformational characterization of the recombinant lectin (rCAL) was performed using biophysical and bioinformatics tools. Thermal denaturation of rCAL caused rapid secondary structural rearrangements above 50 degrees C and transient exposure of hydrophobic residues at 55 degrees C, leading to aggregation. Treatment of rCAL with GdnHCl resulted in unfolding followed by dissociation of the dimer. The single tryptophan in rCAL present on the surface of the protein is surrounded by hydrophobic and acidic amino acids and exists as different conformers. The experimental observations correlated well with the structural information revealed from the homology model of rCAL. (C) 2013 Elsevier B.V. All rights reserved.
Keywords: Aggregation; BL21-CodonPlus (DE3)-RIL cells; Cicer lectin; Homology model; Steady-state and time resolved fluorescence; Unfolding

Solvent-free, highly efficient one-pot multi-component synthesis of 1-amido- and 1-carbamato-alkyl naphthols/phenols catalyzed by ethylammonium nitrate as reusable ionic liquid under neat reaction condition at ambient temperature - Mulla, Shafeek Abdul Rashid; Salama, Tarek A.; Pathan, Mohsinkhan Y.; Inamdar, Suleman M.; Chavan, Santosh S. (Tetrahedron Letters, 2013)
A solvent-free, environmentally clean, mild, and simple one-pot multi-component protocol has been developed for the efficient synthesis of 1-amido- and 1-carbamato-alkyl naphthols/phenols in excellent yields via one-pot three-component condensation of various aldehydes, amides/carbamates/urea, and naphthols/phenols using ethylammonium nitrate (EAN) as a reusable ionic liquid catalyst under neat reaction condition at ambient temperature. (c) 2012 Elsevier Ltd. All rights reserved.
Keywords: Aldehyde; amide; Carbamate Phenol; Ethylammonium nitrate (EAN); Urea

Spatial and temporal changes in the volatile profile of alphonso mango upon exogenous ethylene treatment - Chidley, Hemangi G.; Kulkarni, Ram S.; Pujari, Keshav H.; Giri, Ashok P.; Gupta, Vidya S. (Food Chemistry, 2013)
Alphonso is a highly favoured and exported mango cultivar among the vast mango germplasm of India. Being a climacteric fruit, ethylene plays an important role in ripening of mango. For deeper understanding of effect of pre-climacteric ethylene treatment on volatile profiles of Alphonso mango, 26 volatiles were tracked through six ripening stages of pulp and skin of ethylene-treated and control Alphonso fruits. The study revealed accelerated ripening in terms of early appearance of ripening-specific compounds, lactones and mesifuran, upon ethylene treatment. While the level of lactones remained unaffected, the mesifuran level vastly increased upon ethylene treatment. Skin showed high terpene content while pulp had higher amount of lactones compared to skin. This work points towards involvement of ethylene as a natural hormone in the biosynthesis of lactones and furanones in naturally ripened fruits; whereas, an increase in the terpene level during ripening appears to be independent of ethylene. (C) 2012 Elsevier Ltd. All rights reserved.
Keywords: Ethylene; Flavour; Mango; Pre-climacteric; Ripening; Volatiles

Spin transport and magnetic correlation parameters for graphene-like nanocarbon sheets doped with nitrogen - Alegaonkar, Ashwini P.; Kumar, Arvind; Patil, Sagar H.; Patil, Kashinath R.; Pardeshi, Satish K.; Alegaonkar, Prashant S. (Journal of Physical Chemistry C, 2013)
Globally, graphene magnetism has captivated the attention of researchers in recent years. To obtain magnetic ordering, irregularities in the carbon network, like defects, adatoms, etc., are essential. Herein, we report on spin transport and magnetic correlations in graphene-like nanocarbon sheets (GNCs) that were doped with nitrogen by use of tetrakis(dimethylamino)ethylene (TDAE). The spin transport measurements, performed by electron spin resonance technique, showed that both spin-spin and spin-lattice relaxation times are increased by nitrogen doping. The magnetic correlations, measured on a vibrating sample magnetometer, showed that ordering parameters are reduced for nitrogen-loaded GNCs. Chemical analysis, carried out via electron spectroscopy, revealed that nitrogen atoms exchange couples electron-to-hole with the carbon network Analysis of I-V measurements showed that higher-order resistance is appreciably decreased for nitrogen-doped GNCs. The observed decrease is due to an increase in nonbonding states baying small local density. After doping, states in this region may be localized pi spin populated around the doped region. By and large, the approximately 20% magnetization that exists in GNCs is found to be reduced to 5% by introduction of nitrogen.

Stabilization of graphene quantum dots (GQDs) by encapsulation inside zeolitic imidazolate framework nanocrystals for photoluminescence tuning - Biswal, Bishnu P.; Shinde, Dhanraj B.; Pillai, Vijayamohanan K.; Banerjee, Rahul (Nanoscale, 2013)
Luminescent graphene quantum dots (GQDs) are encapsulated and stabilized in Zeolitic Imidazolate Framework (ZIF-8) nanocrystals. The GQDs are well confined due to the adsorption on the growing face of the ZIF-8 nanocrystals and have a profound effect on the shape of the nanocrystals from rhombic dodecahedron to spherical. Stabilizing GQDs inside the ZIF-8 nanocrystals results in tailoring of the photoluminescence emission (ca. 32 nm, bathochromic shift) of the GQD@ZIF-8 nanocrystal composite even after 3 months of aging under normal laboratory conditions. Also the water adsorption (at STP) capacity increased for the GQD@ ZIF-8 composite as compared to the pristine ZIF-8.

Static and dynamic magnetic properties and effect of surface chemistry on the morphology and crystallinity of DyCrO3 nanoplatelets - Gupta, Preeti; Bhargava, Richa; Das, Raja; Poddar, Pankaj (RSC Advances, 2013)
In this contribution, the structural and magnetic properties of DyCrO3 nanoplatelets, synthesized by a hydrolytic sol-gel method, have been investigated. The crystalline phase of DyCrO3 was attained at the decomposition temperature of 800 degrees C for citric acid and oxalic acid, respectively and their structural analysis indicates a distorted orthorhombic perovskite structure of the DyCrO3 nanoplatelets. The dc-magnetization curve shows the Neel temperature of similar to 144 and similar to 146 K for DyCrO3 nanoplatelets synthesized using citric acid (DCO (C)) and oxalic acid (DCO (O)), respectively. In addition, DCO (O) shows weak anomalies at similar to 22 and similar to 6 K in the zero-field-cooled and field-cooled magnetization curves. Below the Neel temperature, DCO (C) and DCO (O) exhibit cross-over from positive to negative magnetization at similar to 143 and similar to 145 K, respectively. This was attributed to a Dy3+-Cr3+ interaction, which resulted in a weak ferromagnetic coupling (seen as a small opening in the M-H curves). The low temperature transition observed at similar to 6 K can be assigned to the onset of Dy3+-Dy3+ antiferromagnetic interaction.

Static and dynamic magnetic properties and interplay of Dy3+, Gd3+ and Mn3+ spins in orthorhombic DyMnO3 and GdMnO3 nanoparticles - Das, Raja; Jaiswal, Adhish; Poddar, Pankaj (Journal of Physics D-Applied Physics, 2013)
Single-phase orthorhombic DyMnO3 and GdMnO3 nanoparticles in the size range 60-70 and 35-45 nm, respectively, were synthesized using a modified hydrothermal method. The magnetic property measurements of DyMnO3 nanocrystals show anomalies around similar to 43K (antiferromagnetic (AFM) coupling between Mn3+ spins) and at 7K in the form of a peak in the zero-field-cooled curve (AFM coupling between Dy3+ spins). Whereas, GdMnO3 undergoes a phase transition at similar to 42K from paramagnetic to an incommensurate-antiferromagnetic phase (ICAFM) followed by a second anomaly at similar to 22 K, which could be associated with the transition from ICAFM into a canted A-type AFM ordering of the Mn3+ spins. This transition is followed by a long-range ordering of the Gd3+ moments at 6K yielding the canting of the Gd3+ spins with a ferromagnetic (FM) component antiparallel to the FM moment of the canted Mn3+ spins. No anomaly near the Neel temperature of the Mn moments for both DyMnO3 and GdMnO3 nanoparticles was observed in ac magnetization which were observed in dc magnetization. The room temperature Raman spectra of DyMnO3 shows two most intense Raman modes at 480 and 609 cm(-1) which can be assigned to an antisymmetric Jahn-Teller stretching mode and a symmetric or breathing stretching mode, respectively, involving Mn-O bond stretching.

Structural and catalytic properties of a novel vanadium containing solid core mesoporous silica shell catalysts for gas phase oxidation reaction - Venkatathri, N.; Pillai, Vijayamohanan K.; Rajini, A.; Raju, M. Nooka; Reddy, I. A. K. (Journal of Chemical Sciences, 2013)
A novel vanadium containing solid core mesoporous silica shell catalyst was synthesized with different Si/V ratios by sol-gel method under neutral conditions. The synthesized materials were characterized by various techniques and gas phase diphenyl methane oxidation reaction. The mesoporosity combined with microporosity are formed by incorporation of octadecyltrichloro silane and triethylamine in the catalyst and it was found out from E-DAX and BET-surface area analysis. The material was found to be nanocrystalline. Vanadium is present as V4 + species in as-synthesized samples and convert to V5 + on calcination. Most of the vanadium is present in tetrahedral or square pyramidal environment. Incorporation of vanadium in silica framework was confirmed by Si-29 MAS NMR analysis. Among the various vanadium containing solid core mesoporous silica shell catalysts, the Si/V = 100 ratio exhibited maximum efficiency towards diphenyl methane to benzophenone gas phase reaction. The optimum condition required for maximum conversion and selectivity was found out from the catalytic studies.
Keywords: diphenylmethane; Gas phase oxidation; vanadium containing solid core mesoporous silica shell

Structural and logical analysis of a comprehensive hedgehog signaling pathway to identify alternative drug targets for glioma, colon and pancreatic cancer - Chowdhury, Saikat; Pradhan, Rachana N.; Sarkar, Ram Rup (Plos One, 2013)
Hedgehog is an evolutionarily conserved developmental pathway, widely implicated in controlling various cellular responses such as cellular proliferation and stem cell renewal in human and other organisms, through external stimuli. Aberrant activation of this pathway in human adult stem cell line may cause different types of cancers. Hence, targeting this pathway in cancer therapy has become indispensable, but the non availability of detailed molecular interactions, complex regulations by extra- and intra-cellular proteins and cross talks with other pathways pose a serious challenge to get a coherent understanding of this signaling pathway for making therapeutic strategy. This motivated us to perform a computational study of the pathway and to identify probable drug targets. In this work, from available databases and literature, we reconstructed a complete hedgehog pathway which reports the largest number of molecules and interactions to date. Using recently developed computational techniques, we further performed structural and logical analysis of this pathway. In structural analysis, the connectivity and centrality parameters were calculated to identify the important proteins from the network. To capture the regulations of the molecules, we developed a master Boolean model of all the interactions between the proteins and created different cancer scenarios, such as Glioma, Colon and Pancreatic. We performed perturbation analysis on these cancer conditions to identify the important and minimal combinations of proteins that can be used as drug targets. From our study we observed the under expressions of various oncoproteins in Hedgehog pathway while perturbing at a time the combinations of the proteins GLI1, GLI2 and SMO in Glioma; SMO, HFU, ULK3 and RAS in Colon cancer; SMO, HFU, ULK3, RAS and ERK12 in Pancreatic cancer. This reconstructed Hedgehog signaling pathway and the computational analysis for identifying new combinatory drug targets will be useful for future in-vitro and in-vivo analysis to control different cancers.

Structural isomerism leading to variable proton conductivity in indium(III) isophthalic acid based frameworks - Panda, Tamas; Kundu, Tanay; Banerjee, Rahul (Chemical Communications, 2013)
Proton conductivity has been studied thoroughly in two isomeric In(III)-isophthalate based MOFs. In-IA-2D-1 is capable of showing proton conductivity (3.4 x 10(-3) S cm(-1)) under humidified conditions (98% RH), whereas In-IA-2D-2 can conduct protons (2.6 x 10(-5) S cm(-1)) under humidified as well as anhydrous conditions.

Structural modelling of substrate binding and inhibition in penicillin V acylase from pectobacterium atrosepticum - Avinash, Vellore Sunder; Panigrahi, Priyabrata; Suresh, C. G.; Pundle, Archana V.; Ramasamy, Sureshkumar (Biochemical and Biophysical Research Communications, 2013)
Penicillin V acylases (PVAs) and bile salt hydrolases (BSHs) have considerable sequence and structural similarity; however, they vary significantly in their substrate specificity. We have identified a PVA from a Gram-negative organism, Pectobacterium atrosepticum (PaPVA) that turned out to be a remote homolog of the PVAs and BSHs reported earlier. Even though the active site residues were conserved in PaPVA it showed high specificity towards penV and interestingly the penV acylase activity was inhibited by bile salts. Comparative modelling and docking studies were carried out to understand the structural differences of the binding site that confer this characteristic property. We show that PaPVA exhibits significant differences in structure, which are in contrast to those of known PVAs and such enzymes from Gram-negative bacteria require further investigation. (C) 2013 Elsevier Inc. All rights reserved.
Keywords: Bile salt hydrolase; docking; Homology modelling; Inhibition; Pectobacterium; Penicillin acylase

Structural variations of D-pi-A dyes influence on the photovoltaic performance of dye-sensitized solar cells - Marszalek, Magdalena; Nagane, Satyawan; Ichake, Amol; Humphry-Baker, Robin; Paul, Vincent; Zakeeruddin, Shaik M.; Gratzel, Michael (RSC Advances, 2013)
Two new organic D-pi-A dyes containing identical pi-conjugated spacer and anchoring/acceptor moieties but different donor groups were designed and synthesized. These dyes containing didodecylcyclopentadithiophene (CPDT) as a spacer, cyanoacrylic acid as an acceptor and N-butyl-carbazole or N-butyl-phenothiazine moieties as electron donor groups are labelled as V4 and V11 dyes, respectively. The variation in the donor group of these two dyes, that influences the photophysical, electrochemical and photovoltaic parameters, was investigated. The highest photovoltaic conversion efficiency of 7.5% was obtained with V4 dye at AM 1.5 G full sunlight intensity (100 mWcm(-2)). Comparison of phenothiazine donor dyes with two different pi-conjugated spacers, CPDT (V11) and vinyl thiophene (V7) containing devices shows that the V-oc of V7 dye is lower than that of V11 due to the downward shift of the conduction band edge. Transient photovoltage and electrochemical impedance spectroscopy measurements were performed to explain the differences in the PV parameters by varying the donors and/or spacer groups.

Structure-property relationship of different types of polyester industrial yarns - Samui, Barun Kumar; Prakasan, Manikanda Priya; Ramesh, C.; Chakrabarty, Debabrata; Mukhopadhyay, R. (Journal of the Textile Institute, 2013)
Four major types of polyester industrial yarns (1000 Denier) which are used commercially were studied for their key structural parameters. An attempt has been made to establish a relationship between morphology and properties of these yarns. High tenacity (HT) polyester yarn has the highest birefringence, amorphous orientation, and long period but is relatively less crystalline. High shrinkage characteristic of HT polyester yarn can be accounted for its higher amorphous orientation. High modulus low shrinkage (HMLS) polyester yarn has higher crystallinity and crystal size compared to HT yarn. Fraction of tie molecules of these yarns has been calculated and found that low shrinkage (LS) and super low shrinkage (SLS) yarns have lesser tie molecules. These LS and SLS yarns are tailor-made to achieve lower shrinkage and at the same time maintaining a good level of tenacity. This is achieved with lower amorphous orientation in the final drawn yarn structure. Amorphous orientation was found to have stronger influence than any other structural parameter on the key yarn properties like modulus, tenacity, elongation, and shrinkage.
Keywords: modulus; orientation; polyester; shrinkage; structure

Studies on fabrication, characterization, and metal extraction using metal chelating nonwoven nanofiber mats of poly(vinyl alcohol) and sodium alginate blends - Rathna, G. V. N.; Birajdar, Mallinath S.; Bhagwani, Manish; Paul, V. L. (Polymer Engineering and Science, 2013)
Poly(vinyl alcohol) and sodium alginate blends with and without the metal chelate, bis(2,4,4-trimethylpentyl)phosphinic acid were prepared in various compositions and fabricated to stable nanofibers and films to evaluate their efficacy for metals adsorption and desorption. Surface morphology of the nanofibers was characterized by scanning electron microscopy. The solution properties and variation in content of sodium alginate in the feed mixture have influenced morphology of nanofibers. However, influence of bis(2,4,4-trimethylpentyl)phosphinic acid was insignificant. The films and nanofibers were characterized using Fourier transform infrared spectroscopy, differential scanning calorimetry, thermo gravimetric analysis, and X-ray diffraction to understand compatibility between polymers, thermal stability, decomposition temperature, and variations in crystallinity. Metal adsorption studies for nanofiber mats comprising bis(2,4,4-trimethylpentyl)phosphinic acid were demonstrated using copper (II), cobalt(II), and nickel(II) salts. The nanofibers adsorbed more copper (363 mg/g) when compared with films (105 mg/g). Nanofiber mats immobilized with bis(2,4,4-trimethylpentyl)phosphinic acid adsorbed copper in greater magnitude (497 mg/g) than nanofiber mats without bis(2,4,4-trimethylpentyl)phosphinic acid (363 mg/g). However, adsorption of cobalt and nickel was very low to be detected. The metal adsorption and desorption studies were also confirmed by energy dispersive X-ray spectroscopy. POLYM. ENG. SCI., 2013. (c) 2012 Society of Plastics Engineers

Study of grafting of polylactic acid and its copolymer with 12-hydroxy stearic acid on the surface of MWCNT by 13CCP/MAS and AFM - Pandey, Asutosh K.; Garnaik, Baijayantimala (International Journal of Research in Pharmacy and Chemistry, 2013)
The purpose of this study to study the structure property relationship of grafted material on MWCNT, the determination of NMR nuclei spin-lattice (T1) and spin-spin (T2) relaxation times suggest that the broaden signals are associated with diamagnetic species namely the nanotube attached polymer moieties. the AFM image of PLA oligomer grafted MWCNTs and topography patterns comprised of height from 0-250 nm and the side lengths ranging from 0.0 to 7.7 µm. Surface patches are formed randomly distributed employing that the presence of side chain hanged at 12-postion in the copolymer grafted on MWCNTs.

Study of interatomic coulombic decay of Ne(H2O)(n) (n=1,3) clusters using equation-of-motion coupled-cluster method - Ghosh, Aryya; Pal, Sourav; Vaval, Nayana (Journal of Chemical Physics, 2013)
Interatomic Coulombic decay (ICD) is an efficient and ultrafast radiationless decay mechanism which can be initiated by removal of an electron from the inner-valence shell of an atom or molecule. Generally, the ICD mechanism is prevailed in weakly bound clusters. A very promising approach, known as CAP/EOM-CC, consists of the combination of complex absorbing potential (CAP) with the equation-of-motion coupled-cluster (EOM-CC) method, is applied for the first time to study the nature of the ICD mechanism. We have applied this technique to determine the lifetime of an auto-ionized, inner-valence excited state of the NeH2O, Ne(H2O)(2), and Ne(H2O)(3) systems. The lifetime is found to be very short and decreases significantly with the number of neighboring water molecules. (C) 2013 AIP Publishing LLC.

Sugar furanoid trans-vicinal diacid as a gamma-turn inducer: synthesis and conformational study - Vangala, Madhuri; Dhokale, Snehal A.; Gawade, Rupesh L.; Pattuparambil, Rajamohanan R.; Puranik, Vedavati G.; Dhavale, Dilip D. (Organic & Biomolecular Chemistry, 2013)
A simple method for the synthesis of a sugar furanoid trans vicinal diacid and its incorporation into the N-terminal tetrapeptide sequence (H-Phe-Trp-Lys-Thr-OH) to get glycopeptide 8 has been described. 2D NMR and MD simulation studies of 8 clearly show that the sugar diacid adopts a gamma-turn conformation towards the N-terminus.

Surface chemistry and growth mechanism of highly oriented, single crystalline TiO2 nanorods on transparent conducting oxide coated glass substrates - Sadhu, Subha; Jaiswal, Adhish; Adyanthaya, Suguna D.; Poddar, Pankaj (RSC Advances, 2013)
The fabrication of one-dimensional (1D) rods or wires of titania in desired crystalline facets is quite exciting due to unique optoelectronic properties. The single crystalline, oriented nanorods directly grown on transparent conducting oxide (TCO) substrates are finding a lot of interest in solar photovoltaics and several other optoelectronic devices due to enhanced electron transport and lower exciton recombination rates. However, the growth of desired crystalline facets of highly oriented, single crystalline nanorods on different substrates and understanding the interplay between the surface chemistry and growth mechanism still remain a non-trivial and challenging task. Here, for the first time, the kinetically controlled growth of the (310) facet of TiO2 nanorods on fluorine-doped tin oxide (FTO) coated glass substrate has been reported which is in contrast to the previously reported (002) faceted TiO2 nanorods. In addition to this, the growth of (110) facet TiO2 nanorods using amorphous fluorine doped silicon oxide (FSO) as a substrate is also demonstrated. In this paper, it is shown that two different faceted TiO2 nanorods can be synthesized following same synthetic condition by varying only the material properties of the substrate. To investigate the role of substrate chemistry on the morphology and single crystallinity of TiO2 nanorods, electron microscopy, XPS and contact angle measurements have been done. The results clearly indicate an important link between the surface chemistry and morphology of TiO2 nanorods. It can be assumed that there is a role of OH- and water groups which are responsible for the growth of plane (110) which has less surface energy. The observation of (310) facet is quite surprising and can be explained based on FTO crystallinity. It is possible to tune the diameter of the titania nanorods by further coating the FTO substrate with a thin gold layer due to increase in the hydrophilicity of the substrate. Finally, a light to electricity conversion efficiency of 2.5% could be achieved by using vertically grown titania nanorods on FTO as the photoanode in a dye sensitized solar cell (DSSC).

Surfactant-free synthesis of anisotropic gold nanostructures: can dicarboxylic acids alone act as shape directing agents? - Kumar, D. V. Ravi; Kumavat, S. R.; Chamundeswari, V. N.; Patra, Partha Pratim; Kulkarni, A. A.; Bhagavatula L. V. Prasad (RSC Advances, 2013)
The present study describes the synthesis of gold nanostructures using different dicarboxylic (viz. oxalic, malonic, succinic, glutaric and adipic) acids as reducing agents in the absence of any other additives or surfactants. Various anisotropic structures such as kites, tadpoles, triangular/hexagonal plates, and twinned particles were seen to evolve depending on the molar ratio of dicarboxylic acid to HAuCl4 used. It was also demonstrated that gold nanostructure formation is hampered as the chain length/distance between two carboxylic acid groups increases. Among the various structures obtained the kite like structures displayed the largest surface enhanced Raman enhancement factors.

Synergetic effect of combination of AOP's (hydrodynamic cavitation and H2O2) on the degradation of neonicotinoid class of insecticide - Raut-Jadhav, Sunita; Saharan, Virendra Kumar; Pinjari, Dipak; Sonawane, Shirish; Saini, Daulat; Pandit, Aniruddha (Journal of Hazardous Materials, 2013)
In the present work, degradation of imidacloprid (neonicotinoid class of insecticide) in aqueous solution has been systematically investigated using hydrodynamic cavitation and combination of hydrodynamic cavitation (HC) and H2O2. Initially, effect of different operating parameters such as inlet pressure to the cavitating device (5-20 bar) and operating pH (2-7.5) has been investigated. Optimization of process parameters was followed by the study of effect of combination of HC and H2O2 process on the rate of degradation of imidacloprid. Significant enhancement in the rate of degradation of imidacloprid has been observed using HC+H2O2 process which lead to a complete degradation of imidacloprid in 45 min of operation using optimal molar ratio of imidacloprid:H2O2 as 1:40. Substantial synergetic effect has been observed using HC+H2O2 process which confer the synergetic coefficient of 22.79. An attempt has been made to investigate and compare the energy efficiency and extent of mineralization of individual and combined processes applied in the present work. Identification of the byproducts formed during degradation of imidacloprid has also been done using LC-MS analysis. The present work has established a fact that hydrodynamic cavitation in combination with H2O2 can be effectively used for degradation of imidacloprid. (C) 2013 Elsevier B.V. All rights reserved.
Keywords: Advanced oxidation processes; Hydrodynamic cavitation; Imidacloprid; Synergetic coefficient; Venturi

Synthesis and antimicrobial activity of novel oxysterols from lanosterol - Shingate, Bapurao B.; Hazra, Braja G.; Salunke, Deepak B.; Pore, Vandana S.; Shirazi, Fazal; Deshpande, Mukund V. (Tetrahedron, 2013)
Chemically diverse oxysterols and their synthetic manipulations were carried out from variety of Delta(8(9)_) lanosterol derivatives and evaluated for their in vitro antimicrobial activities. Most of the synthesized oxysterols exhibited significant antifungal activity against the tested strains. (C) 2013 Elsevier Ltd. All rights reserved.
Keywords: Allylic oxidation; antibacterial activity; Antifungal activity; Dihydroxylation; Oxygenated steroids

Synthesis and molecular structure of a zinc complex of the vitamin K-3 analogue phthiocol - Kathawate, Laxmi; Sproules, Stephen; Pawar, Omkar; Markad, Ganesh; Haram, Santosh K.; Puranik, Vedavati G.; Salunke-Gawali, Sunita (Journal of Molecular Structure, 2013)
The complex [Zn(phthiocol)(2)(H2O)(2)]; 1, where phthiocol is 2-hydroxy-3-methyl-1,4-naphthoquinone, has been synthesized and characterized by elemental analysis, FT-IR, H-1 NMR, UV-vis spectroscopy, thermogravimetric (TG) analysis, electrochemical and single crystal X-ray diffraction studies. The v(C=O) stretch shifts to lower frequencies upon complexation of phthiocol to Zn2+. H-1 NMR spectra show an upfield shift of the benzenoid ring protons in 1. There is a bathochromic shift of the LMCT band in the UV-vis spectra of 1. Single crystal X-ray structure of 1 show distorted octahedral geometry around Zn2+. Two phthiocol ligands are in plane with the metal, while water molecules are trans to this plane. Coordination of deprotonated phthiocol ligands is `trans, trans' to Zn2+. Intra as well as intermolecular interactions are observed in 1. Molecules of 1 show three dimensional network through C-H center dot center dot center dot O and O-H center dot center dot center dot O interactions. Additional anodic peaks are observed in cyclic voltammogram of phthiocol ligand due to oxidation of reduced species formed during reduction. One-electron reduction of 1 is shown to be reversible and DFT studies define this redox event as ligand-centered. (c) 2013 Elsevier B.V. All rights reserved.
Keywords: hydrogen bonding; Naphthoquinone; Phthiocol; Trans coordination; Vitamin K-3; Zinc complex

Synthesis and X-ray single crystal structure of a cadmium(II) acetophenone thiosemicarbazone complex and its use as a single-source precursor for the preparation of CdS nanocrystallites and thin films - Palve, Anil M.; Joshi, Pranaya V.; Puranik, Vedavati G.; Garje, Shivram S. (Polyhedron, 2013)
{A cadmium(II) acetophenone thiosemicarbazone complex has been prepared and characterized by elemental analysis, infrared and nuclear magnetic resonance (H-1 and C-13H-1) spectroscopic techniques. Its single crystal structure has also been determined. The compound is found to be monoclinic, space group C2/c, with a = 12.1020(3) angstrom
Keywords: CdS; Nanocrystallites; Single source precursor; Thin films; Thiosemicarbazone complex

Synthesis of Ag-glyconanoparticles using C-glycosides, their lectin binding studies and antibacterial activity - Ramtenki, Vilas; Raju, D.; Mehta, Urmil J.; Ramana, C. V.; Bhagavatula L. V. Prasad (New Journal of Chemistry, 2013)
Two 12-C-glycosyl dodecanoic acids, namely, 1-(alpha-D-mannopyranosyl)-12-dodecanoic acid and 1-(alpha-D-glucopyranosyl)-12-dodecanoic acid were synthesized. Their ability to act as reducing and capping agents for the synthesis of water re-dispersible silver nanoparticles is displayed. These Ag C-glycosyl nanoparticles were later utilized to investigate the carbohydrate-lectin interactions. Furthermore, the specificity of mannoside binding to the surface of the Gram negative bacterium Escherichia coli has been utilized to demonstrate the enhanced antibacterial activity of Ag-C-mannosyl nanoparticles towards this bacterium as compared to Ag-C-glycosyl nanoparticles.

Synthesis of low coercive BaFe12O19 hexaferrite for microwave applications in low-temperature cofired ceramic - Rane, Vivek A.; Meena, Sher Singh; Gokhale, Suresh P.; Yusuf, S. M.; Phatak, Girish J.; Date, Sadgopal K. (Journal of Electronic Materials, 2013)
Polycrystalline M-type barium hexaferrite (BaFe12O19) samples have been synthesized by solution combustion route at different pH and calcination conditions in order to reduce the coercivity for microwave applications in low-temperature cofired ceramic (LTCC) substrates. Structural, morphological, and magnetic properties of BaFe12O19 were studied by x-ray diffraction (XRD), field emission scanning electron microscopy (FESEM), Raman spectroscopy, vibrating sample magnetometry (VSM), and Mossbauer spectroscopy. The formation of a single-phase hexagonal structure was confirmed by XRD. The Raman spectra reveal all characteristic peaks of BaFe12O19, illustrating the phase purity and crystal lattice symmetry of the synthesized material. Mossbauer spectra illustrate the existence of Fe3+ cations at all five crystallographic lattice sites. The microstructural features observed by FESEM disclose the growth of nanoregime particles into hexagonal platelet particles after calcination at temperatures from 800A degrees C to 1200A degrees C. The VSM results show a lower coercivity (1350 Oe to 3500 Oe) together with reasonably high saturation magnetization (55 emu/g to 60 emu/g) and a high bulk resistivity (> 10(9) Omega-cm) at room temperature. The dependence of magnetic and electrical properties on the preparation and processing conditions is also discussed.
Keywords: Barium hexaferrite; coercivity; LTCC; Mossbauer spectroscopy; Raman spectroscopy

Synthesis of palmyrolide A and its cis-isomer and mechanistic insight into trans-cis isomerisation of the enamide macrocycle - Philkhana, Satish Chandra; Seetharamsingh, B.; Dangat, Yuvraj B.; Vanka, Kumar; Reddy, D. Srinivasa (Chemical Communications, 2013)
Concise and protecting-group free synthesis of ent-palmyrolide A and (-)-cis-palmyrolide A were achieved starting from commercially available (S)-citronellal. The key fragment of palmyrolide A, ``(5S,7S)-7-hydroxy-5,8,8-trimethylnonanamide'', which makes up the most challenging part of the target molecule, was prepared in just three steps. A plausible mechanism for the trans-cis isomerization of the double bond in the macrocycle has been investigated.

Synthesis of triangular gold nanoplates: role of bromide ion and temperature - Kumar, D. V. Ravi; Kulkarni, Amol A.; Bhagavatula L. V. Prasad (Colloids and Surfaces A-Physicochemical and Engineering Aspects, 2013)
Synthesis of noble metal triangular nanoplates is a kinetically controlled process in which temperature and packing defects play a major role. Nucleation and growth process of kinetically controlled reaction can be greatly influenced by temperature affecting the yield and edge length of the triangles. Through a conventional batch mode process, here we study the effect of temperature on nucleation and growth of gold triangular nanoplates and obtain some insight of the temperature effects on the final yield and edge length of triangles. The role of Br- ions in the synthesis of triangular nanoplates is studied by varying the amount of CAB and by replacing the CTAB with HBr. The results show that, while CTAB controls the edge length and yield of triangles, its use is not mandatory to attain plate like morphology. Finally we show that, while the initial temperature of the reaction mixture governs the nucleation rate and the rate of temperature rise governs the growth rate of particles, they along with the concentration of Br- ions control the edge length and yield. (C) 2013 Elsevier B.V. All rights reserved.
Keywords: Au nanotriangles; Halide ion effect; heat transfer; Kinetically controlled; Nature of gold precursor complex; Nucleation and growth; Optical properties

Synthetic zipper peptide motif orchestrated via co-operative interplay of hydrogen bonding, aromatic stacking, and backbone chirality - Nair, Roshna V.; Kheria, Sanjeev; Rayavarapu, Suresh; Kotmale, Amol S.; Jagadeesh, Bharatam; Gonnade, Rajesh G.; Puranik, Vedavati G.; Rajamohanan, Pattuparambil R.; Sanjayan, Gangadhar J. (Journal of the American Chemical Society, 2013)
Here, we report on a new class of synthetic zipper peptide which assumes its three-dimensional zipper-like structure via a co-operative interplay of hydrogen bonding, aromatic stacking, and backbone chirality. Structural studies carried out in both solid- and solution-state confirmed the zipper-like structural architecture assumed by the synthetic peptide which makes use of unusually remote inter-residual hydrogen-bonding and aromatic stacking interactions to attain its shape. The effect of chirality modulation and the extent of noncovalent forces in the structure stabilization have also been comprehensively explored via single-crystal X-ray diffraction and solution-state NMR studies. The results highlight the utility of noncovalent forces in engineering complex synthetic molecules with intriguing structural architectures.

Thermoresponsive and biodegradable dextran based microgels: synthesis and structural investigation - Ghugare, Shivkumar V.; Chiessi, Ester; Sakai, Victoria Garcia; Telling, Mark T. F.; Wadgaonkar, Prakash P.; Paradossi, Gaio (Macromolecular Symposia, 2013)
Nanostructured objects, often ranging from hundreds of nanometers to few microns, support a number of functions directly linked to their structural features. They are, or they will be, protagonists in biomedical applications where miniaturized activities are required. These include the interface with living systems as tissues and cells, where targeted release of drug molecules occurs, or molecular imaging methods monitoring the drug trafficking in specific cell districts. The potentials of such devices, far to be fully understood, will be assessed only when a close correlation of their functions with their structure will be established. In this contribution we present a dextran based microdevice responsive to temperature and biodegradable. Both thermoresponsivity and biodegradability are of relevance for the potential use as drug carrier and controlled release device. The temperature behaviour, overall structure and internal architectures have been addressed with different methods.
Polymer Networks Conference (PNG), WY, AUG 12-16, 2012
Keywords: Biomaterials; colloids; dynamic light scattering; hydrogels; p(NiPAAm)

Thiolated graphene - a new platform for anchoring CdSe quantum dots for hybrid heterostructures - Debgupta, Joyashish; Pillai, Vijayamohanan K. (Nanoscale, 2013)
Effective organization of small CdSe quantum dots on graphene sheets has been achieved by a simple solution exchange with thiol terminated graphene prepared by diazonium salt chemistry. This generic methodology of CdSe QD attachment to any graphene surface has remarkable implications in designing hybrid heterostructures.

Transition-metal-free multicomponent reactions involving arynes, N-heterocycles, and isatins - Bhunia, Anup; Roy, Tony; Pachfule, Pradip; Rajamohanan, Pattuparambil R.; Biju, Akkattu T. (Angewandte Chemie-International Edition, 2013)
Mix and match: With isoquinoline as the nucleophilic trigger, multicomponent reactions afforded spirooxazino isoquinoline derivatives, proceeding through 1,4-dipolar intermediates. The use of pyridine as a nucleophile furnished indolin-2-one derivatives, with the reaction likely proceeding through a pyridylidene intermediate.

Understanding the orientation of water molecules around the phosphate and attached functional groups in a phospholipid molecule: a DFT-based study - Mishra, Deepti; Das, Susanta; Krishnamurthy, Sailaja; Pal, Sourav (Molecular Simulation, 2013)
The adsorption of water molecules around a polar region (in particular around the phosphate moiety) in the phospholipid molecules is studied in this work. Phospholipid molecules with different functional groups are known to respond differently to the water molecules. Hence, we attempt to study the adsorption of water molecules around the phosphate group as a consequence of the change of functional group attached to the phosphate group, viz. phosphatidyl ethanolamine (PE), phosphatidyl choline (PC) and phosphatidyl glycerol (PG). As the latter is anionic in nature, the charge is compensated by Na+ counterion. Up to seven water molecules are adsorbed around the phosphate groups in model systems mimicking phospholipid molecule. The corresponding changes in the structural and electronic aspects are analysed. The significant difference between the PE and PC model systems is the formation of clathrate-like structure in the latter. Itisnoticed that as the number of water molecules increases to seven, both the hydrogen atoms in the water molecule participate in hydrogen bonding. However, in the PG model system, the charge-compensating counterion prevents the water molecule to form clathrate-like structures. The adsorption sites for water molecules are validated by density functional theory-based reactivity descriptors, viz. Fukui functions in the PE model system.
Keywords: cHelpG; DMPC; DMPE; DMPG; Fukui functions; Hydration

Understanding the site selectivity in small-sized neutral and charged AI(n) (4 <= n <= 7) clusters using density functional theory based reactivity descriptors: a validation study on water molecule adsorption - Das, Susanta; Pal, Sourav; Krishnamurty, Sailaja (Journal of Physical Chemistry A, 2013)
Aluminum clusters are now technologically important due to their high catalytic activity. Our present study on the small-sized aluminum clusters applies density functional theory (DFT)-based reactivity descriptors to identify potential sites for adsorption and eventual chemical reaction. Depending on symmetry, susceptibility of various type of reactive sites within a cluster toward an impending electrophilic and/or nucleophilic attack is predicted using the reactivity descriptors. In addition, the study devises general rules as to how the size, shape, and charge of the cluster influences the number of available sites for an electrophilic and/or nucleophilic attack. The predictions by reactivity descriptors are validated by performing an explicit adsorption of water molecule on Al clusters with four atoms. The adsorption studies demonstrate that the most stable water-luster complex is obtained when the molecule is adsorbed through an oxygen atom on the site with the highest relative electrophilicity.

Zeolitic imidazolate framework (ZIF)-derived, hollow-core, nitrogen-doped carbon nanostructures for oxygen-reduction reactions in PEFCs - Palaniselvam, Thangavelu; Biswal, Bishnu P.; Banerjee, Rahul; Kurungot, Sreekumar (Chemistry-A European Journal, 2013)
The facile synthesis of a porous carbon material that is doped with iron-coordinated nitrogen active sites (FeNC-70) is demonstrated by following an inexpensive synthetic pathway with a zeolitic imidazolate framework (ZIF-70) as a template. To emphasize the possibility of tuning the porosity and surface area of the resulting carbon materials based on the structure of the parent ZIF, two other ZIFs, that is, ZIF-68 and ZIF-69, are also synthesized. The resulting active carbon material that is derived from ZIF-70, that is, FeNC-70, exhibits the highest BET surface area of 262m2g-1 compared to the active carbon materials that are derived from ZIF-68 and ZIF-69. The HR-TEM images of FeNC-70 show that the carbon particles have a bimodal structure that is composed of a spherical macroscopic pore (about 200nm) and a mesoporous shell. X-ray photoelectron spectroscopy (XPS) reveals the presence of Fe-N-C moieties, which are the primary active sites for the oxygen-reduction reaction (ORR). Quantitative estimation by using EDAX analysis reveals a nitrogen content of 14.5wt.%, along with trace amounts of iron (0.1wt.%), in the active FeNC-70 catalyst. This active porous carbon material, which is enriched with Fe-N-C moieties, reduces the oxygen molecule with an onset potential at 0.80V versus NHE through a pathway that involves 3.3-3.8e- under acidic conditions, which is much closer to the favored 4e- pathway for the ORR. The onset potential of FeNC-70 is significantly higher than those of its counterparts (FeNC-68 and FeNC-69) and of other reported systems. The FeNC-based systems also exhibit much-higher tolerance towards MeOH oxidation and electrochemical stability during an accelerated durability test (ADT). Electrochemical analysis and structural characterizations predict that the active sites for the ORR are most likely to be the insitu generated NFeN2+2/C moieties, which are distributed along the carbon framework.
Keywords: Doping; Electrochemistry; metal-organic frameworks; Nanostructures; oxygen-reduction reaction

1,8-Diazabicyclo[5.4.0]undec-7-ene (DBU): a highly efficient catalyst in glycerol carbonate synthesis - Munshi, Mudassir K.; Gade, Swapna M.; Mane, Manoj V.; Mishra, Deepti; Pal, Sourav; Vanka, Kumar; Rane, Vilas H.; Kelkar, Ashutosh A. (Journal of Molecular Catalysis A-Chemical, 2014)
Transesterification of dimethyl carbonate (DMC) with glycerol (GLY) was investigated using various amines as catalysts. Amidines like 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) and 1,5-diazabicyclo[4.3.0]non-5-ene (DBN) were found to be the best catalysts for this reaction. Best results: 98% conversion of GLY with 96% selectivity to GC (TON: 9408), were obtained with DBU as a catalyst. Effect of various reaction conditions on activity and selectivity were investigated using DBU as catalyst. The mechanism of the reaction was investigated with the help of H-1, C-13 and N-15 NMR analysis and OFT calculations. (C) 2014 Elsevier B.V. All rights reserved.
Keywords: DBU; Glycerol; Glycerol carbonate; transesterification

3D micro-porous conducting carbon beehive by single step polymer carbonization for high performance supercapacitors: the magic of in situ porogen formation - Puthusseri, Dhanya; Aravindan, Vanchiappan; Madhavi, Srinivasan; Ogale, Satishchandra (Energy & Environmental Science, 2014)
We report non-templated synthesis of interconnected microporous carbon (IMPC) sheets having beehive morphology by direct pyrolysis of poly(acrylamide-co-acrylic acid) potassium salt in inert atmosphere without any activation. The presence of the alkali metal in the selected polymer precursor results in a high specific surface area of 1327 m(2) g(-1). Importantly, 80% of the pore volume is contributed by micropores with pore size ranging from 1-2 nm which is ideal for use as an electrode for supercapacitors. Whereas the rest of the surface area was contributed by a small fraction of mesopores and macropores due to the interconnected structure. The presence of three different types of pores make the material ideal for supercapacitor electrodes. IMPC was tested as an electrode in both aqueous and non-aqueous supercapacitors. All the aqueous measurements were done in 1 M H2SO4 solution with a potential window 1 V. A specific capacitance of 258 F g(-1) was realized at a constant charge-discharge current of 0.5 A g(-1) and it maintained at a value of 150 F g(-1) at 30 A g(-1). A long cycle stability of 90% capacitance retention was observed after 5000 charge-discharge cycles at a current density of 2 A g(-1). At the highest power density 13 600 W kg(-1) the energy density was found to be 3.1 W h kg(-1). Non aqueous performance was tested in the presence of 1 M LiPF6 in ethylene carbonate-di-methyl carbonate with 5 mg active material loading. A specific capacitance of 138 F g(-1) was obtained at a current density of 0.25 A g(-1) and it retained at a value of 100 F g-1 at 10 A g(-1). The material can deliver an energy density of 31 W h kg(-1) at its highest power density of 11 000 W kg(-1) in a two electrode system based on active material loading.

Access to harmonine, a chemical weapon of ladybird beetles - Philkhana, Satish Chandra; Dhasaiyan, Prabhu; Bhagavatula L. V. Prasad; Reddy, D. Srinivasa (RSC Advances, 2014)
The synthesis of harmonine, a defense alkaloid from the harlequin ladybird is reported by three different routes. The preparation of several new analogs with the same molecular weight and the decoration of gold nanoparticles with harmonines are also part of the present communication.

Additive induced capture of elusive polymorphs of conformationally flexible Sulfonamides/Sulfoesters - Shaikh, Samir Rashid; Gawade, Rupesh L.; Chakravarty, Debamitra K.; Puranik, Vedavati G.; Gonnade, Rajesh (Acta Crystallographica A‐Foundation and Advances, 2014)
Keywords: additive induced polymorphism; intermolecular interactions; phase transition

Anti-cancer therapeutic potential of quinazoline based small molecules via global upregulation of miRNAs - Nahar, Smita; Bose, Debojit; Panja, Sumit Kumar; Saha, Satyen; Maiti, Souvik (Chemical Communications, 2014)
Three quinazoline based small molecules showed global upregulation of miRNA expression with a selective enrichment of tumor suppressor miRNAs. The target genes of the upregulated miRNAs were predicted to be enriched for apoptotic pathways. Apoptotic induction following treatment with quinazoline compounds was confirmed by in cellulo studies. Thus, these small molecules having the core structural moiety (2,4-diphenyl-quinazoline) can be used as scaffolds to design activators of miRNA expression paving the way for novel anti-cancer drugs.

Anti-fungal potentials of extracellular metabolites of western ghats isolated streptomyces sp NII 1006 against moulds and yeasts - Jayamurthy, Himani; Sajna, Kuttavan Valappil; Dastager, Syed Gulam; Pandey, Ashok (Indian Journal of Experimental Biology, 2014)
Realization of hazardious effects of chemical fungicides has led to an interest in the usage of biocontrol agents. The present study, therefore, evaluates the biocontrol efficacy of Western Ghats (India) soil bacterial isolates. A potential strain NII 1006 was evaluated for its antagonistic property against a diverse range of moulds and yeasts. The strain was characterized morphologically, biochemically and molecularly, which revealed the isolate belonged to Streptomyces genus. Organic solvent extracts of NII 1006 culture filtrates inhibited the growth of the test pathogens indicating that growth suppression was due to extracellular anti-fungal metabolites present in the culture filtrates. The strain produced extracellular chitinase enzyme in addition to some stable partially purified anti-fungal compounds. Morphological changes such as hyphae degradation into debris and abnormal shapes were observed in test fungi and yeast grown on potato dextrose broth that contained the NII 1006 culture filtrate. The cell free supernatant has a tolerance to wide range of pH, temperature and enzymes such as lipase and protease. The biocontrol potential of NII 1006 strain may be correlated significantly with their ability to produce antibiotics as well as extracellular hydrolytic enzymes particularly chitinolytic enzyme.
Keywords: Anti-fungal activity; Biocontrol; Extracellular anti-fungal metabolites; Streptomyces

Antimicrobial and SEM studies of sophorolipids synthesized using lauryl alcohol - Dengle-Pulate, Vrushali; Chandorkar, Parul; Bhagwat, Sunil S.; Prabhune, Asmita Ashutosh (Journal of Surfactants and Detergents, 2014)
In recent years, researchers have developed biosurfactants for industrial, pharmaceutical and medical applications revealing the promising biological activities of these biomolecules. One of the best studied microbial surfactants are glycolipids, especially sophorolipids (SLs) produced by selected non-pathogenic yeast species of Candida. They are biodegradable, non-toxic and are environmentally friendly. Sophorolipid production was carried out using glucose as the hydrophilic source and lauryl alcohol C12-14, as the hydrophobic source using Candida bombicola ATCC 22214. Primary characterization of the SL obtained using lauryl alcohol (SLLA) was done by FTIR which depicted the presence of alkyl sophorosides/SLs. Antimicrobial activity testing revealed that SLLA showed complete inhibition against gram negative bacteria, Escherichia coli (ATCC 8739) Pseudomonas aeruginosa (ATCC 9027) at 30 and 1 mu g/ml at a contact time of 2 and 4 h respectively. Whereas for gram positive bacteria Staphylococcus aureus (ATCC 6358), Bacillus subtilis (ATCC 6633), complete inhibition was observed at 6 and 1 mu g/ml respectively at a contact time of 4 h. The formed SLLA showed noteworthy inhibition against the pathogenic yeast Candida albicans (ATCC 2091) at 50 mu g/ml with a contact time of 4 h. These values are remarkably low compared to reported values of oleic acid SLs and linolenic acid SLs which were studied for antimicrobial properties. Scanning electron microscopy analysis of the treated cells revealed the changes in morphology and topography of the microorganisms.
Keywords: Antimicrobial property; Biosurfactants; Candida bombicola; Lauryl alcohol; sophorolipids

Artificial intelligence-based modeling of high ash coal gasification in a pilot plant scale fluidized bed gasifier - Patil-Shinde, Veena; Kukarni, Tejas; Kulkarni, Rahul; Chavan, Prakash D.; Sharma, Tripurari; Sharma, Bijay Kumar; Tambe, Sanjeey S.; Kulkarni, B. D. (Industrial & Engineering Chemistry Research, 2014)
The quality of coalespecially its high ash contentsignificantly affects the performance of coal-based processes. Coal gasification is a cleaner and an efficient alternative to the coal combustion for producing the syngas. The high-ash coals are found in a number of countries, and they form an important source for the gasification. Accordingly, in this study, extensive gasification experiments were conducted in a pilot-plant scale fluidized-bed coal gasifier (FBCG) using high-ash coals from India. Specifically, the effects of eight coal and gasifier process related parameters on the four gasification performance variables, namely CO+H-2 generation rate, syngas production rate, carbon conversion, and heating value of the syngas, were rigorously studied. The data collected from these experiments were used in the FBCG modeling, which was conducted by utilizing two artificial intelligence (AI) strategies namely genetic programming (GP) and artificial neural networks (ANNs). The novelty of the GP formalism is that it searches and optimizes both the form and parameters of an appropriate linear/nonlinear function that best fits the given process data. The original eight-dimensional input space of the FBCG models was reduced to three-dimensional space using the principal component analysis (PCA) and the PCA-transformed three variables were used in the AI-based FBCG modeling. A comparison of the GP and ANN-based models reveals that their output prediction accuracies and the generalization performance vary from good to excellent as indicated by the high training and test set correlation coefficient magnitudes lying between 0.92 and 0.996. This study also presents results of the sensitivity analysis performed to identify those coal and process related parameters, which significantly affect the FBCG process performance.

Atypical energetic and kinetic course of excited-state intramolecular proton transfer (ESIPT) in room-temperature protic ionic liquids - Manna, Arpan; Sayed, Mhejabeen; Kumar, Anil; Pal, Haridas (Journal of Physical Chemistry B, 2014)
The excited-state intramolecular proton-transfer (ESIPT) process in 1,8-dihydroxyanthraquinone (18DHAQ) dye has been investigated in protic ionic liquid (PIL) solvents using photochemical measurements. The results demonstrate noteworthy modulations in both steady-state and time-resolved emission characteristics of excited normal (N*) and tautomeric (T*) forms of the dye. That the emission of T* increases unexpectedly upon increasing solvent viscosity indicates that subsequent to the initial forward ESIPT, there is also a relatively slower back ESIPT process involved for the excited dye. It is inferred that the propensity of this back ESIPT process is determined by the dynamics of the diffusive solvent relaxation, a process that is known to be strongly viscosity-dependent in ionic liquids. Evidence of both forward and back ESIPT for the dye has been obtained from femtosecond fluorescence up-conversion measurements. While an unusually fast forward ESIPT is clearly observed in all of the PILs studied, the uncommon back ESIPT process is distinctly indicated in PIL solvents having lower viscosities, certainly due to reasonably fast diffusive solvent relaxation in these solvents that causes a temporal modulation in the energies of the normal and tautomeric forms within a reasonably short time and thereby brings down the energy of N* compared to that of T*, triggering the back ESIPT process. Observation of solvent-viscosity-dependent back ESIPT is an intriguing finding for the present study as to the best of our knowledge, such a behavior has so far not been reported in the literature for the ESIPT reaction.

Biogenic synthesis of selenium nanoparticles and their effect on as(III)-induced toxicity on human lymphocytes - Prasad, Kumar Suranjit; Selvaraj, Kaliaperumal (Biological Trace Element Research, 2014)
{A bioreductive capacity of a plant, Terminalia arjuna leaf extract, was utilized for preparation of selenium nanoparticles. The leaf extract worked as good capping as well as stabilizing agent and facilitated the formation of stable colloidal nanoparticles. Resulting nanoparticles were characterized using UV-Vis spectrophotometer, transmission electron microscopy (TEM), energy dispersive X-ray analysis (EDAX), Fourier transform infrared spectroscopy (FT-IR), and X-ray diffraction analysis (XRD), respectively. The colloidal solution showed the absorption maximum at 390 nm while TEM and selected area electron diffraction (SAED) indicated the formation of polydispersed, crystalline selenium nanoparticles of size raging from 10 to 80 nm. FT-IR analysis suggested the involvement of O-H, N-H
Keywords: Arsenite; Comet assay; EDAX; MTT assay; Selenium nanoparticles; Terminalia arjuna

Calcium oxide supported gold nanoparticles as catalysts for the selective epoxidation of styrene by t-butyl hydroperoxide - Dumbre, Deepa K.; Choudhary, Vasant R.; Patil, Nilesh S.; Uphade, Balu S.; Bhargava, Suresh Kumar (Journal of Colloid and Interface Science, 2014)
Gold nanoparticles are deposited on basic CaO supports as catalysts for the selective conversion of styrene into styrene oxide. Synthetic methods, gold loading and calcination temperatures are varied to permit an understanding of their influence on gold nanoparticle size, the presence of cationic gold species and the nature of interaction between the gold nanoparticles and the CaO support. Based on these studies, optimal conditions are designed to make the Au/CaO catalyst efficient for the selective epoxidation of styrene. (C) 2013 Elsevier Inc. All rights reserved.
Keywords: Au/CaO; Epoxidation of styrene; gold nanoparticles; Homogenous deposition precipitation method; Styrene oxide

Can silylenes rival transition metal systems in bond-strengthening pi-back donation? a computational investigation - Pal, Amrita; Vanka, Kumar (Chemical Communications, 2014)
Full quantum chemical calculations with density functional theory (DFT) show that bond-strengthening back-donation to a pi-diborene, recently discovered for transition metal systems (Braunschweig and co-workers, Nat. Chem., 2013, 5, 115-121), would be just as favored for Main Group silylene complexes. This result not only shows the range and applicability of the bond-strengthening back-bonding interaction, but also showcases the capacity of silylene complexes to do new chemistry, such as the cooperative activation of carbon monoxide and carbon dioxide.

Capturing a novel metastable polymorph of the anticancer drug gefitinib - Thorat, Shridhar H.; Patwadkar, Manjusha V.; Gonnade, Rajesh G.; Vaidhyanathan, R. (CrystEngComm, 2014)
Gefitinib, a life-extending anticancer drug, exhibits solvent-mediated conformational polymorphism to yield stable (form I) and novel metastable (form II) polymorphs. Crystal structure analysis revealed 3D isostructurality in the molecular organization of the polymorphs, and the metastable polymorph undergoes a crystal-to-crystal thermal phase transition to the stable polymorph.

Cationic charged helical glycopolypeptide using ring opening polymerization of 6-deoxy-6-azido-glyco-N-carboxyanhydride - Shaikh, Ashif Y.; Das, Soumen; Pati, Debasis; Dhaware, Vinita; Sen Gupta, Sayam; Hotha, Srinivas (Biomacromolecules, 2014)
Glycopolypeptides with a defined secondary structure are of significance in understanding biological phenomena. Synthetic glycopolypeptides, or polypeptides featuring pendant carbohydrate moieties, have been of particular interest in the field of tissue engineering and drug delivery. In this work, we have synthesized charged water-soluble glycopolypeptides that adopt a helical conformation in water. This was carried out by the synthesis of a glyco-N-carboxyanhydride (glyco-NCA) containing an azide group at the sixth position of the carbohydrate ring. Subsequently, the NCA was polymerized to obtain azide-containing glycopolypeptides having good control over molecular weight and polydispersity index (PDI) in high yields. We were also able to control the incorporation of the azide group by synthesizing random co-glycopolypeptide containing 6-deoxy-6-azido and regular 6-OAc functionalized glucose. This azide functionality allows for the easy attachment of a bioactive group, which could potentially enhance the biological activity of the glycopolypeptide. We were able to obtain water-soluble charged glycopolypeptides by both reducing the azide groups into amines and using CuAAC with propargylamine. These charged glycopolypeptides were shown to have a helical conformation in water. Preliminary studies showed that these charged glycopolypeptides showed good biocompatibility and were efficiently taken up by HepG2 cells.

Cellulose supported cuprous iodide nanoparticles (Cell-CuI NPs): a new heterogeneous and recyclable catalyst for the one pot synthesis of 1,4-disubstituted-1,2,3-triazoles in water - Chavan, Pramod V.; Pandit, Kapil S.; Desai, Uday V.; Kulkarni, Makarand A.; Wadgaonkar, Prakash P. (RSC Advances, 2014)
Cellulose supported cuprous iodide nanoparticles (Cell-CuI NPs) have been demonstrated for the first time as an efficient heterogeneous catalyst in the click synthesis of 1,4-disubstituted 1,2,3-triazoles by a one-pot three component reaction between aralkyl/alkyl bromides, alkynes and sodium azide in water. The catalyst has been characterized by XRD, HRTEM, SEM, ICP-AES, EDS as well as IR spectroscopy. It was found to be reusable for five consecutive runs without significant loss of activity.

Characteristics of HRV patterns for different yoga postures - Pitale, Rahul; Tajane, Kapil; Phadke, Leena; Joshi, Aniruddha; Umale, Jayant (2014 Annual IEEE India Conference (INDICON), 2014)
Human heart rate fluctuates in a complex and non-stationary manner, due to continuous influences from autonomic nervous system and other factors (harmones, temp, etc) on the sinoatrial node (S.A) (Pacemaker of the heart). ANS dysfunction is known to be associated with various cardiovascular and lifestyle diseases. The importance of traditional ancient Indian practice like Yoga has increased significantly due to the observed beneficial effects of it in various lifestyle diseases. Preliminary studies have shown that yoga may have its beneficial effect by influencing autonomic nervous system. Heart rate variability (HRV) is a most promising predictive and prognostic marker of autonomic (ANS) activity. HRV is analyzed by time and frequency domain parameters (Fast Fourier Transform). Being linear parameters these are not able to extract full information regarding the non linear behavior of heart rate fluctuations. In this paper, we propose to analyze HRV by using linear as well as non-linear methods during different yogaasanas. These mathematical models will be useful to understand the underlying physiological mechanisms during different yogasanas.
Keywords: ECG; HRV; Poincare plot; Recurrence plot; Yogasanas

Chemistry of materials celebrates the 80th birthday of one of the premier "chemists of materials" - Prasad, Bhagavatula L. V; Buriak, Jillian M. (Chemistry of Materials, 2014)

Cholesterol modulates the dimer interface of the beta(2)-adrenergic receptor via cholesterol occupancy sites - Prasanna, Xavier; Chattopadhyay, Amitabha; Sengupta, Durba (Biophysical Journal, 2014)
The beta(2)-adrenergic receptor is an important member of the G-protein-coupled receptor (GPCR) superfamily, whose stability and function are modulated by membrane cholesterol. The recent high-resolution crystal structure of the beta(2)-adrenergic receptor revealed the presence of possible cholesterol-binding sites in the receptor. However, the functional relevance of cholesterol binding to the receptor remains unexplored. We used MARTINI coarse-grained molecular-dynamics simulations to explore dimerization of the beta(2)-adrenergic receptor in lipid bilayers containing cholesterol. A novel (to our knowledge) aspect of our results is that receptor dimerization is modulated by membrane cholesterol. We show that cholesterol binds to transmembrane helix IV, and cholesterol occupancy at this site restricts its involvement at the dimer interface. With increasing cholesterol concentration, an increased presence of transmembrane helices I and II, but a reduced presence of transmembrane helix IV, is observed at the dimer interface. To our knowledge, this study is one of the first to explore the correlation between cholesterol occupancy and GPCR organization. Our results indicate that dimer plasticity is relevant not just as an organizational principle but also as a subtle regulatory principle for GPCR function. We believe these results constitute an important step toward designing better drugs for GPCR dimer targets.

Clay encapsulated Cu(OH)(x) promoted homocoupling of arylboronic acids: an efficient and eco-friendly protocol - Dar, Bashir Ahmad; Singh, Snehil; Pandey, Nalini; Singh, A. P.; Sharma, Priti; Lazar, Anish; Sharma, Meena; Vishwakarma, Ram A.; Singh, Baldev (Applied Catalysis A-General, 2014)
Cu(OH)(x) has been encapsulated over montmorillonite-KSF by simple ologomeric deposition strategy. The resulting catalyst has been employed for selective homocoupling of arylboronic acids under ambient conditions without requirement of any ligand or base. This catalyst is easy to recover and shows excellent reusability without losing its activity. Techniques like XRD, SEM, TPR, IR, BET surface area measurement and XPS were used to characterize the catalyst. The present method promises for the simple and clean homocoupling of arylboronic acids. (C) 2013 Elsevier B.V. All rights reserved.
Keywords: Biaryls; clay; Copper; Heterogenous catalyst; Homocoupling

Co-immobilized glucose oxidase and beta-galactosidase on bovine serum albumin coated allyl glycidyl ether (AGE)-ethylene glycol dimethacrylate (EGDM) copolymer as a biosensor for lactose determination in milk - Jasti, Lakshmi Swarnalatha; Dola, Sandhya Rani; Fadnavis, Nitin W.; Addepally, Uma; Daniels, Siona; Ponrathnam, Surendra (Enzyme and Microbial Technology, 2014)
Bovine serum albumin (BSA) was adsorbed on allyl glycidyl ether (AGE)-ethylene glycol dimethacrylate (EGDM) copolymer with 25% crosslink density (AGE-25) at pH 8.0 (16% w/w). The amino, thiol and carboxylic acid functional groups available on protein coated surface were utilized for covalent immobilization of glucose oxidase and beta-galactosidase, both independently, and in a step-wise manner on the same matrix, with no more than 10% loss of enzyme activity during immobilization. Glutaraldehyde cross-linking after immobilization provided stable enzyme preparations. The pH-optima of the immobilized enzymes were similar to those for free enzyme but their thermal stability was vastly improved. The co-immobilized enzyme support was used as a biosensor for determination of lactose in milk with excellent reproducibility and reusability. (C) 2014 Elsevier Inc. All rights reserved.
Keywords: beta-Galactosidase; Bovine serum albumin; Glucose oxidase; Immobilization; Lactose assay

Comparison of polymer induced and solvent induced trypsin denaturation: the role of hydrophobicity - Jasti, Lakshmi Swarnalatha; Fadnavis, Nitin W.; Addepally, Uma; Daniels, Siona; Deokar, Sarika Babasaheb; Ponrathnam, Surendra (Colloids and Surfaces B-Biointerfaces, 2014)
Trypsin adsorption from aqueous buffer by various copolymers of allyl glycidyl ether-ethylene glycol dimethacrylate (AGE-EGDM) copolymer with varying crosslink density increases with increasing crosslink density and the effect slowly wears off after reaching a plateau at 50% crosslink density. The copolymer with 25% crosslink density was reacted with different amines with alkyl/aryl side chains to obtain a series of copolymers with 1,2-amino alcohol functional groups and varying hydrophobicity. Trypsin binding capacity again increases with hydrophobicity of the reacting amine and a good correlation between logP(octanol) of the amine and protein binding is observed. The bound trypsin is denatured to the extent of 90% in spite of the presence of hydrophilic hydroxyl and amino groups. The behavior was comparable to that in mixtures of aqueous buffer and water-miscible organic co-solvents where the solvent concentration required to deactivate 50% of the enzyme (C-50) is dependent on logP(octanol) of the co-solvent. (C) 2014 Elsevier B.V. All rights reserved.
Keywords: Adsorption; Denaturation; Hydrophobicity; Polymer; Trypsin

Complex absorbing potential based coupled-cluster methods to metastable states - Pal, Sourav (248th National Meeting of the American-Chemical-Society (ACS), 2014)
248th National Meeting of the American-Chemical-Society (ACS), San Francisco, CA, AUG 10-14, 2014

Complex absorbing potential based equation-of-motion coupled cluster method for the potential energy curve of CO2- anion - Ghosh, Aryya; Vaval, Nayana; Pal, Sourav; Bartlett, Rodney J. (Journal of Chemical Physics, 2014)
The equation-of-motion coupled cluster method employing the complex absorbing potential has been used to investigate the low energy electron scattering by CO2. We have studied the potential energy curve for the (2)Pi(u) resonance states of CO2- upon bending as well as symmetric and asymmetric stretching of the molecule. Specifically, we have stretched the C-O bond length from 1.1 angstrom to 1.5 angstrom and the bending angles are changed between 180 degrees and 132 degrees. Upon bending, the low energy (2)Pi(u) resonance state is split into two components, i.e., (2)A(1), B-2(1) due to the Renner-Teller effect, which behave differently as the molecule is bent. (c) 2014 AIP Publishing LLC.

Computational investigation on the catalytic activity of Rh-6 and Rh4Ru2 clusters towards methanol activation - Ghatak, Kamalika; Sengupta, Turbasu; Krishnamurty, Sailaja; Pal, Sourav (Theoretical Chemistry Accounts, 2014)
Catalysis of molecular activation of small molecules through scission of strong chemical bonds is one of the major challenges faced by chemists. More specifically, activation of the strong C-H and O-H bonds of various alcohols, especially methanol, is one of the various important intermediate steps of key organic reactions. Our present work explores a suitable metal cluster catalyst towards methanol dissociation. In particular, we have examined the effect of ruthenium doping (Rh:Ru = 2:1) on the catalytic activity of Rh-6 cluster towards methanol dissociation. Density functional theory-based calculations illustrate two competitive pathways for methanol dissociation, which are via O-H and C-H bond breaking. Both the pathways are found to be energetically favourable in the presence of bimetallic and mono-metallic clusters. Importantly, energy barrier for O-H bond dissociation reduces considerably in doped cluster as compared to pure Rh-6 cluster and is smaller than the values reported for a number of other small metallic clusters.
Keywords: Bimetallic Clusters; Density Functional Theory (DFT); Doping; Methanol Activation; Rhodium Clusters

Conformational modulation of peptide secondary structures using beta-aminobenzenesulfonic acid - Kale, Sangram S.; Kunjir, Shrikant M.; Gawade, Rupesh L.; Puranik, Vedavati G.; Rajamohanan, P. R.; Sanjayan, Gangadhar J. (Chemical Communications, 2014)
This communication describes the influence of beta-aminobenzenesulfonic acid ((S)Ant) on the conformational preferences of hetero foldamers. The designed (Aib-(S)Ant-Aib)(n) and (Aib-(S)Ant-Pro)(n) oligomers display a well-defined folded conformation featuring intramolecular mixed hydrogen bonding (7/11) and intra-residual (6/5) H-bonding interactions, respectively.

Controlled release of antimicrobial Cephalexin drug from silica microparticles - Rao, B. V. Bhaskara; Mukherji, Ruchira; Shitre, G.; Alam, F.; Prabhune, Asmita; Kale, Sangeeta N. (Materials Science & Engineering C-Materials for Biological Applications, 2014)
Release of antimicrobial drugs in a controlled fashion for extended duration of time has been investigated for long. Such controlled-drug-releasing materials show promising applications in medicinal bandages. Along with antimicrobial agents, one could also incorporate other therapeutic drugs, to make such bandages more versatile. In this context, silica micro particles were synthesized using direct reduction method, in which the synthesis was done in the presence of Cephalexin. Cephalexin was chosen as an antimicrobial candidate. The morphological characterization shows formation of monodispersed, silica microparticles of similar to 200 nm in size. The FTIR spectroscopy shows weak interaction of the drug molecule at its hydroxide (OH) site with oxygen ions on the silica surface. Upon conjugation, the UV-vis spectroscopy shows persistence of the Cephalexin signature, especially its R group, confirming its antimicrobial activity even after conjugation. Loading studies reveal 12% Cephalexin loading on silica. The antimicrobial studies were done on three micro-organisms, namely, Staphylococcus aureus, Bacillus subtilis and Escherichia coli. Using zone-of-inhibition studies, it was found that E. coli, did not respond to the delivery of Cephalexin either directly or via microparticles. However, for both S. aureus and B. subtilis, the particles showed controlled release of Cephalexin for the duration of 48 h and continued maintenance and even increase in the zone of inhibition. This work demonstrates an effective protocol to prepare antimicrobial patches for controlled drug delivery. (C) 2013 Elsevier B.V. All rights reserved.
Keywords: Antimicrobial; Medicinal bandage; Silica microparticles; sustained drug release

Copper(I) bromide-catalyzed carbonylative coupling of aryl halides with phenols, alcohols and amines using sodium cyanide as C-1 source: a synthesis of carboxylic acid derivatives - Prasad, Pragati K.; Sudalai, Arumugam (Advanced Synthesis & Catalysis, 2014)
A new ``carbon monoxide-free'' synthesis of carboxylate derivatives via carbonylative coupling of aryl bromides with phenols, alcohols, amines and acids in the presence of copper(I) bromide as catalyst and sodium cyanide in a stoichiometric amount has been developed. Its intramolecular version provides for the preparation of lactones (e.g., isochroman-1-ones and isobenzfuranones), imides, anhydrides and lactams in excellent yields (73-96%).
Keywords: anhydrides; C-1 building blocks; isochroman-1-ones; lactams; lactones

Counter-ion dependent, longitudinal unzipping of multi-walled carbon nanotubes to highly conductive and transparent graphene nanoribbons - Shinde, Dhanraj B.; Majumder, Mainak; Pillai, Vijayamohanan K. (Scientific Reports, 2014)
Here we report for the first time, a simple hydrothermal approach for the bulk production of highly conductive and transparent graphene nanoribbons (GNRs) using several counter ions from K2SO4, KNO3, KOH and H2SO4 in aqueous media, where, selective intercalation followed by exfoliation gives highly conducting GNRs with over 80% yield. In these experiments, sulfate and nitrate ions act as a co-intercalant along with potassium ions resulting into exfoliation of multi-walled carbon nanotubes (MWCNTs) in an effective manner. The striking similarity of experimental results in KOH and H2SO4 that demonstrates partially damaged MWCNTs, implies that no individual K+, SO42- ion plays a key role in unwrapping of MWCNTs, rather this process is largely effective in the presence of both cations and anions working in a cooperative manner. The GNRs can be used for preparing conductive 16 k Omega sq(-1), transparent (82%) and flexible thin films using low cost fabrication method.

Coupled cluster methods for autoionisation resonances - Sajeev, Y.; Ghosh, A.; Vaval, N.; Pal, S. (International Reviews in Physical Chemistry, 2014)
The quantum chemical calculation of autoionisation resonances in many-electron systems is a highly challenging task due to the ionisation continuum involved. Recently, advances were reported where conventionally used ab initio codes can be employed to compute autoionisation resonances. This is made possible by the use of analytical continuation tools such as complex scaling and complex absorbing potential (CAP) in the electronic structure codes. We review the formulation and the use of complex scaling and CAP in coupled cluster methods for the electron correlated calculation of energy position and autoionisation decay rate of resonance states. The application of analytically continued coupled cluster method for the correlated calculation of interatomic or intermolecular Coulombic decay process is also discussed.
Keywords: autoionisation resonances; complex absorbing potential; complex scaling; equation-of-motion coupled cluster; Fock space multi-reference-coupled cluster; intermolecular Coulombic decay

Crystal shape evolution using polyhedral population balance - Shaikh, Latif J.; Ranade, Vivek V.; Pandit, Aniruddha B. (Industrial & Engineering Chemistry Research, 2014)
Research on crystal morphology covers shape evolution of single crystal and evolution of the size and shape distribution of populations of crystals. The population balance models have been used for the single or multiple dimensions for predicting the evolution of crystal size distributions (CSDs). More often than not these models do not consider the change in solute concentration due to disappearance/appearance of the crystal faces and therefore compromise rigorous mass balance. The present work focuses on the methodology for the morphological evolution of crystal shape using a polyhedral population balance model. This methodology is based on the morphodrome which illustrates the shapes of crystals at various operating conditions. gPROMS software (PSE, UK) along with Microsoft Excel is used to devise the framework for predicting the crystal shape evolution. The developed approach and models can be implemented for various crystallization systems and will be useful for simulating crystal shape evolutions.

Crystalline porous materials for gas adsorption - Pal, Tapan Kumar; Banerjee, Rahul (Acta Crystallographica A‐Foundation and Advances, 2014)
Keywords: Covalent organic framework; gas adsorption

C@SiNW/TiO2 core-shell nanoarrays with sandwiched carbon passivation layer as high efficiency photoelectrode for water splitting - Devarapalli, Rami Reddy; Debgupta, Joyashish; Pillai, Vijayamohanan K.; Shelke, Manjusha V. (Scientific Reports, 2014)
One-dimensional heterostructure nanoarrays are efficiently promising as high performance electrodes for photo electrochemical (PEC) water splitting applications, wherein it is highly desirable for the electrode to have a broad light absorption, efficient charge separation and redox properties as well as defect free surface with high area suitable for fast interfacial charge transfer. We present highly active and unique photoelectrode for solar H-2 production, consisting of silicon nanowires (SiNWs)/TiO2 core-shell structures. SiNWs are passivated to reduce defect sites and protected against oxidation in air or water by forming very thin carbon layer sandwiched between SiNW and TiO2 surfaces. This carbon layer decreases recombination rates and also enhances the interfacial charge transfer between the silicon and TiO2. A systematic investigation of the role of SiNW length and TiO2 thickness on photocurrent reveals enhanced photocurrent density up to 5.97 mA/cm(2) at 1.0 V vs. NHE by using C@SiNW/TiO2 nanoarrays with photo electrochemical efficiency of 1.17%.

Cu(II) conjugation along the transformation of a vitamin K-3 derivative to a dinaphthoquinone methide radical - Badave, Kirti D.; Patil, Shalaka S.; Khan, Ayesha A.; Srinivas, Darbha; Butcher, Raymond J.; Gonnade, Rajesh G.; Puranik, Vedavati G.; Pinjari, Rahul V.; Gejji, Shridhar P.; Rane, Sandhya Y. (New Journal of Chemistry, 2014)
1,1'-Methide-bi-vitamin K-3 (B) has been isolated as a dinaphthoquinone methide radical (DNQM) by the transformation of 1-imino(acetylhydrazino)-vitamin K-3 (A). The transformation follows a biomimetic activation pathway mediated via Cu(II) ion catalyzed oxidative coupling. Single crystal X-ray and electron spin resonance (ESR) experiments combined with density functional calculations elucidate the ``resonance structure'' of the DNQM radical (B). Fluorescence investigations reveal that DNQM facilitates interaction with the cysteine residue. As compared to the parent substrate, B shows a depletion in the level of GSH, triggering apoptosis in HeLa cells.

Defluoridation using biomimetically synthesized nano zirconium chitosan composite: kinetic and equilibrium studies - Prasad, Kumar Suranjit; Amin, Yesha; Selvaraj, Kaliaperumal (Journal of Hazardous Materials, 2014)
{The present study reports a novel approach for synthesis of Zr nanoparticles using aqueous extract of Aloe vera. Resulting nanoparticles were embedded into chitosan biopolymer and termed as CNZr composite. The composite was subjected to detailed adsorption studies for removal of fluoride from aqueous solution. The synthesized Zr nanoparticles showed UV-vis absorption peak at 420 nm. TEM result showed the formation of polydispersed, nanoparticles ranging from 18 nm to 42 nm. SAED and XRD analysis suggested an fcc (face centered cubic) Zr crystallites. EDAX analysis suggested that Zr was an integral component of synthesized nanoparticles. FT-IR study indicated that functional group like -NH
Keywords: Aloe vera; Chitosan; FT-IR spectroscopy; Sorption; Zirconium nanoparticles

Design and development of POCN-pincer palladium catalysts for C-H bond arylation of azoles with aryl iodides - Khake, Shrikant M.; Soni, Vineeta; Gonnade, Rajesh G.; Punji, Benudhar (Dalton Transactions, 2014)
{Well-defined and efficient POCN-ligated palladium complexes have been developed for the direct C H bond arylation of azoles with aryl iodides. The phosphinite-amine pincer ligands 1-(R2PO)-C6H4-3-((CH2NPr2)-Pr-i) 1R2POCNIPr2-H; R = `Pr (1a)

Design and engineering of organic molecules for customizable terahertz tags - Ray, Shaumik; Dash, Jyotirmayee; Nallappan, Kathirvel; Kaware, Vaibhav; Basutkar, Nitin; Ambade, Ashootosh; Joshi, Kavita; Pesala, Bala (Terahertz, RF, Millimeter, and Submillimeter-Wave Technology and Applications VII, 2014)
Terahertz (THz) frequency band lies between the microwave and infrared region of the electromagnetic spectrum. Molecules having strong resonances in this frequency range are ideal for realizing "Terahertz tags" which can be easily incorporated into various materials. THz spectroscopy of molecules, especially at frequencies below 10 THz, provides valuable information on the low frequency vibrational modes, viz. intermolecular vibrational modes, hydrogen bond stretching, torsional vibrations in several chemical and biological compounds. So far there have been very few attempts to engineer molecules which can demonstrate customizable resonances in the THz frequency region. In this paper, Diamidopyridine (DAP) based molecules are used as a model system to demonstrate engineering of THz resonances (< 10 THz) by fine-tuning the molecular mass and bond strengths. Density Functional Theory (DFT) simulations have been carried out to explain the origin of THz resonances and factors contributing to the shift in resonances due to the addition of various functional groups. The design approach presented here can be easily extended to engineer various organic molecules suitable for THz tags application.

Design, synthesis and cytotoxicity of novel N-benzylpiperidin-4-one oximes on human cervical cancer cells - Dindulkar, Someshwar D.; Bhatnagar, Ira; Gawade, Rupesh L.; Puranik, Vedavati G.; Kim, Se-Kwon; Anh, Dong Hyun; Parthiban, Paramasivam; Jeong, Yeon Tae (Journal of Chemical Sciences, 2014)
A series of fifteen diversified N-benzylpiperidin-4-one oximes were synthesized and characterized by their NMR spectral data. Additionally, single-crystal XRD analysis was performed for the representative symmetrically and unsymmetrically substituted molecules. All the synthesized oximes from unsymmetrical ketones existed as E-isomer as witnessed by their NMR and XRD data. Among the synthesized target compounds that evaluated for their in vitro cytotoxicity against human cervical carcinoma (HeLa) cells, five compounds were potent with IC50 < 17 mu M. 1-Benzyl-2,6-bis(4-isopropylphenyl)-3-methylpiperidin-4-one oxime 3c with an IC50 of 13.88 mu M was found to be the best active compound as depicted by the microscopic analysis.
Keywords: Cytotoxicity; HeLa cells; N-benzylpiperidin-4-one oximes; single-crystal XRD

Determination of optimum values of descriptors to set filters for synthetic tri-pyrrole derivatives (prodiginines) against multi drug resistant strain of plasmodium falciparum - Masand, Vijay H.; Mahajan, Devidas T.; Pourbasheer, Eslam; Hadda, Taibi Ben; Chauhan, Harsh; Gajbhiye, Jayant M.; Alafeefy, A. M. (Current Research in Drug Discovery, 2014)
Abstract: In the present study, we have carried out extensive non-linear Quantitative-Structure Activity Relationship (QSAR) analysis to correlate in vitro anti-malarial activity against multi drug resistant strain of Plasmodium falciparum. Forty-three synthetic prodiginines with different structural features were used for their potential antimalarial activity. Linear, bilinear, biexponential and parabolic equations were developed. These equations were compared to determine the optimum values of descriptors for very useful and easily interpretable descriptors. The optimum values of these descriptors could be helpful in finding and optimizing a good lead compound. Obtained correlations reveal that various factors like lipophilicity, molecular weight and number of bonds have non-linear relation with the anti-malarial activity. Keywords: Prodiginines, Anti-Malarial Activity, Optimum/Desirability Values, Hybrid Inverse-QSAR

Development of a novel method to grow mono-/few-layered MoS2 films and MoS2-graphene hybrid films for supercapacitor applications - Patil, Sagar; Harle, Arti S.; Sathaye, Shivaram; Patil, Kashinath (CrystEngComm, 2014)
The controlled synthesis of highly crystalline MoS2 atomic layers remains a challenge for practical applications of this emerging material. We demonstrate a facile method to synthesize crystalline mono-layered/few-layered MoS2 thin films at the liquid-liquid interface which can be suitably transferred to the substrates. The films are characterized by XRD for their crystal structure and by SEM and TEM for the morphology. MoS2 nanosheet-graphene nanosheet (MoS2-GNS) hybrid films have been developed by the application of layer-by-layer (LbL) techniques. Cyclic voltammetry and other electrochemical characterization techniques reveal that the hybrid film electrode shows a specific capacitance of 282 F g(-1) at a scan rate of 20 mV s(-1). The as-obtained hybrid electrode is robust and exhibits much improved cycle life (>1000), retaining over 93% of its initial capacitance as revealed by galvanostatic charge/discharge studies. The confirmation of better performance as a supercapacitor of the composite was studied by electrochemical impedance spectroscopy. These results indicate that the MoS2-GNS hybrid is a promising candidate for the electrode material in supercapacitor applications.

Dilution does the trick: role of mixed solvent evaporation in controlling nanoparticle self-assembly - Sahu, Puspanjali; Bhagavatula L. V. Prasad (Colloids and Surfaces A-Physicochemical and Engineering Aspects, 2014)
An easy and convenient way to prepare superlattices of amine capped gold nanoparticles is presented. It is clearly established that solvent evaporation significantly influences the nature of resulting superlattices and critically governs whether monolayer or multilayer superlattices are formed. More specifically, it is demonstrated that dilution of the nanoparticle dispersion with a similar solvent (but with different vapour pressure) is an expedient handle to control the nature of self-assembly. (C) 2014 Elsevier B.V. All rights reserved.
Keywords: Evaporation rate; gold nanoparticles; Nucleation; Self-assembly

Dimorphism and hydrocarbon metabolism in Yarrowia lipolytica var. indica - Palande, A. S.; Kulkarni, S. V.; Leon-Ramirez, C.; Campos-Gongora, E.; Ruiz-Herrera, J.; Deshpande, Mukund V. (Archives of Microbiology, 2014)
Yarrowia lipolytica is able to metabolize high Mr hydrophobic natural compounds such as fatty acids and hydrocarbons. Characteristically, strains of Y. lipolytica can grow as populations with variable proportions of yeast and filamentous forms. In the present study, we describe the dimorphic characteristics of a variant designated as Y. lipolytica var. indica isolated from petroleum contaminated sea water and the effect of cell morphology on hydrocarbon metabolism. The variant behaved as a yeast monomorphic strain, under conditions at which terrestrial Y. lipolytica strain W29 and its derived strains, grow as almost uniform populations of mycelial cells. Using organic nitrogen sources and N-acetylglucosamine as carbon source, var. indica was able to form mycelial cells, the proportion of which increased when incubated under semi-anaerobic conditions. The cell surface characteristics of var. indica and W29 were found to be different with respect to contact angle and percent hydrophobicity. For instance, percent hydrophobicity of var. indica was 89.93 +/- A 1.95 while that of W29 was 70.78 +/- A 1.1. Furthermore, while all tested strains metabolize hydrocarbons, only var. indica was able to use it as a carbon source. Yeast cells of var. indica metabolized hexadecane with higher efficiency than the mycelial form, whereas the mycelial form of the terrestrial strain metabolized the hydrocarbon more efficiently, as occurred with the mycelial monomorphic mutant AC11, compared to the yeast monomorphic mutant AC1.
Keywords: Hexadecane metabolism; Yarrowia lipolytica; Yeast-mycelium transition

Dinitrogen activation by silicon and phosphorus doped aluminum clusters - Das, Susanta; Pal, Sourav; Krishnamurty, Sailaja (Journal of Physical Chemistry C, 2014)
N-2 reduction is crucial for life, and very few catalysts are currently available to carry out this process at ambient temperature and pressure. In the present work, density functional theory based calculations reveal doped aluminum clusters to be highly reactive toward molecular nitrogen and hence are prospective materials for its activation at low temperatures. Calculations on silicon and phosphorus doped aluminum clusters with 5-8 atoms demonstrate an enhanced N-2 activation with respect to their pristine ground state and high energy counterparts. This increased efficiency of N-2 activation by doped ground state Al clusters is corroborated by an increment of the N N bond length, a red shift in N N bond stretching frequency, and adsorption energy (E-ad). Ab initio molecular-dynamics simulations demonstrate consequential efficiency of doped clusters toward dinitrogen activation at finite temperature. The ability of doped clusters toward activation of molecular nitrogen is site and shape sensitive. In short, this theoretical study highlights the critical role of doping foreign impurities for future endeavors in the design of cost-effective and efficient catalysts for N-2 activation at ambient temperatures. This observation may spur further studies in the field of aluminum nanocatalysis by doping silicon and phosphorus atom in aluminum clusters.

Divergent total synthesis of 1,6,8a-tri-epi-castanospermine and 1-deoxy-6,8a-di-epi-castanospermine from substituted azetidin-2-one (beta-lactam), involving a cascade sequence of reactions as a key step - Tiwari, Dipak Kumar; Bharadwaj, Kishor Chandra; Puranik, Vedavati G.; Tiwari, Dharmendra Kumar (Organic & Biomolecular Chemistry, 2014)
A divergent, short, and novel total synthesis of 1,6,8a-tri-epi-castanospermine (7) and 1-deoxy-6,8a-di-epi-castanospermine (8) has been developed via a common precursor, 15, obtained from D-mannitol derived beta-lactam. The key step involves a one pot cascade sequence of trimethyl sulfoxonium ylide based cyclization of epoxy sulfonamide 14 via epoxide ring opening, one carbon homologation followed by intramolecular cyclization.

Easy access to alpha-aryl substituted gamma-ketophosphonates: lewis acid mediated reactions of 1,3-diketones with alpha-hydroxyphosphonates and tandem regioselective C-C bond cleavage - Pallikonda, Gangaram; Chakravarty, Manab; Sahoo, Manoj Kumar (Organic & Biomolecular Chemistry, 2014)
A range of alpha-aryl substituted gamma-ketophosphonates is synthesised by Lewis acid mediated reactions of 1,3-diketones and easily accessible, inexpensive benzylic alpha-hydroxyphosphonates in an operationally simple method under solvent-free conditions without exclusion of air/moisture. A regioselective C-C bond cleavage for 1,3-diketones in a tandem fashion has also been demonstrated. Synthesis of a gamma-ketophosphonate with phenol functionality at the a-position (structural analogue of raspberry ketone, a natural product) has also been presented.

Effect of method of preparation on hydrodesulphurization activity of Co- or Ni-promoted MoS2/SBA-15 catalysts - Garg, Shelu; Soni, Kapil; Prasad, V. V. D. N.; Kumar, Manoj; Bhaskar, Thallada; Gupta, J. K.; Dhar, G. Murali; Gopinath, Chinnakonda S. (Journal of Chemical Sciences, 2014)
Ordered mesoporous material SBA-15 was synthesized and used as a support for the preparation of molybdenum sulphide catalysts through precipitation from homogeneous solution (PFHS) technique with the Mo content varying from 2-12 wt%. The prepared catalysts were evaluated for thiophene hydrodesulphurizadon catalytic activities at 400 degrees C. Catalysts prepared through PFHS method resulted in highly dispersed MoS2 catalysts, which were inferred from powder X-ray diffraction (XRD), X-ray photoelectron spectroscopy (XPS), low temperature oxygen chemisorptions (LTOC) and BET surface area analysis. The relationship between XPS intensity ratio, oxygen chemisorption and catalytic activities is discussed in terms of highly dispersed nano particles of MoS2 and its consequence in accommodating more promoted atoms at the edge sites.
21st National Symposium on Catalysis (CATSYMP), CSIR Indian Inst Chem Technol, Hyderabad, INDIA, FEB 11-13, 2013
Keywords: HDS; MoS2; PFHS method; promotional effects; SBA-15

Effect of pH on the hydrolytic kinetics of gamma-glutamyl transferase from bacillus subtilis - Balakrishna, Sharath; Prabhune, Asmita (Scientific World Journal, 2014)
The effect of pH on the steady state kinetics of gamma-glutamyl transferase (GGT) from Bacillus subtilis was examined using glutamyl-(3-carboxyl)-4-nitroanilide as the chromogenic reporter substrate. The enzyme was active in the pH range 7.0-11.0 with the optimum activity at pH 11.0. We noticed a pH dependent transformation in the nature of substrate consumption kinetics. The substrate saturation curves were hyperbolic in the pH range 7.0-9.0 but changed into sigmoid form at pH 10.0 and 11.0. Hill's coefficients were > 1. We also analysed the effect of pH on the structure of the enzyme. The circular dichroism spectra of the enzyme sample at pH 9.0 and 11.0 were coincidental in both far and near UV regions indicating conservation of the secondary and tertiary structures, respectively. Themolecular weight of the enzyme sample was the same in both pH 7.0 and 11.0 indicating conservation of the quaternary structure. These results show that the kinetic transformation does not involve significant conformational changes. Cooperative binding of multiple substrate molecules may not be the basis for the sigmoid kinetics as only one substrate binding site has been noticed in the reported crystal structures of B. subtilis GGT.

Effect of preparation parameters on characterization and activity of Co3O4 catalyst in liquid phase oxidation of lignin model substrates - Mate, Vivek R.; Jha, Ajay; Joshi, U. D.; Patil, K. R.; Shirai, M.; Rode, C. V. (Applied Catalysis A-General, 2014)
The nano structured spinel cobalt oxide (Co3O4) was prepared via simple co-precipitation method and its catalytic activity was evaluated for the liquid phase aerobic oxidation of lignin sub structure compounds such as veratryl alcohol. Catalyst preparation parameters influenced its morphology eventually affecting its oxidation activity. Thus, nano rod shaped CO3O4 catalyst showed 75% and 38% conversion of veratryl alcohol with complete selectivity to veratryl aldehyde in toluene and water, respectively, under base free condition. The influence of reaction conditions, such as temperature, oxygen pressure and catalyst loading was studied to obtain the optimum product yield and selectivity to the desired product. Furthermore, oxidation of various sub-structures of lignin model compounds was also studied over the same catalyst which was found to be in the following order: secondary alcohol >di-substituted > tri-substituted > monosubstituted > non-substitution. The stability of the catalyst was confirmed by its successful recycle for three times. (c) 2014 Elsevier B.V. All rights reserved.
Keywords: Coniferyl alcohol; Nano Co3O4; Sinapyl alcohol; TPR; Veratryl alcohol

Effect of self-assembly on triiodide diffusion in water based polymer gel electrolytes: an application in dye solar cell - Soni, S. S.; Fadadu, K. B.; Vekariya, R. L.; Debgupta, Joyashish; Patel, K. D.; Gibaud, A.; Aswal, Vinod K. (Journal of Colloid and Interface Science, 2014)
The preparation of ordered polymer gels from the amphiphilic block copolymers, Pluronic (R) F77, P123 and polyethylene glycol in the presence of ionic liquid, iodine and organic additives is presented. At 35%(w/w) concentration these copolymers (F77 and P123) self-assembled into cubic liquid crystalline phase in aqueous solution and characterized by using SAXS and AFM measurements. The effects of micellar aggregation formed by polymers on the ionic transport and triiodide diffusion have been studied by electro-chemistry and SANS experiments. The ionic migration or triiodide diffusion through these polymer gels is found to be affected by the PEO/PPO content in the polymer backbone. These gels were successfully employed as an electrolyte in a dye sensitized solar cell. A remarkable solar to electricity conversion efficiency and good stability was obtained using Pluronic (R) F77 based gel, which is attributed to its thermoreversible sol to gel transition. (C) 2014 Elsevier Inc. All rights reserved.
Keywords: Amphiphilic block copolymer; Dye solar cell; Micellar nanochannels; SANS; SAXS; Self-assembly; Water based gel electrolytes

Effect of silicon doping on the reactivity and catalytic activity of gold clusters - Manzoor, Dar; Krishnamurty, Sailaja; Pal, Sourav (Journal of Physical Chemistry C, 2014)
Doping is known to be an excellent and simple way of catalyst design. Although notable progress has been made in understanding the reactivity and catalytic activity of gas-phase and supported gold clusters, very few studies have been carried out on the doped gold clusters. In the present work, we have carried out density functional theory calculations to investigate the effect of silicon doping on the reactivity and catalytic activity of gold nanoclusters. The present work particularly focuses on the adsorption and activation of molecular oxygen on the pristine and silicon-doped gold clusters. The results confirm that the silicon-doped Au7Si cluster shows considerable binding and activation of the O-2 molecule in comparison to the pristine Au-8 cluster as reflected in the relevant geometrical parameters (O-O and Au-O bond lengths) and O-O stretching frequency. However, silicon doping has no contrasting effect on the reactivity and catalytic activity of the Au-7 cluster. In addition to the stronger binding and activation of the O-2 molecule, the doped Au7Si cluster leads to a significant reduction in the activation barrier (0.57 eV) for the environmentally important CO oxidation reaction in contrast to the catalytically inactive pristine Au-8 cluster (1.22 eV). Thus, our results highlight the critical role of doping foreign impurities for future endeavors in the field of gold nanocatalysis.

Efficient conversion of cellulose to levulinic acid by hydrothermal treatment using zirconium dioxide as a recyclable solid acid catalyst - Joshi, Sunil S.; Zodge, Amit D.; Pandare, Kiran V.; Kulkarni, Bhaskar D. (Industrial & Engineering Chemistry Research, 2014)
Conversion of cellulose into platform chemicals is essential for sustainable development of the chemical industry. With this aim, single step hydrothermal conversion of cellulose to industrially important levulinic acid using zirconium dioxide as a catalyst has been investigated. A remarkably high yield (53.9 mol %) of levulinic acid with excellent accountability and total conversion of cellulose has been achieved at 180 degrees C reaction temperature and reaction time of 3 h with 2 wt % of catalyst and 2 g of cellulose. The major products identified were levulinic acid (LA), formic acid (FA), 5-hydroxymethylfurfural (5-HMF), furfural, and humins. Formation of humins during cellulose hydrolysis and dehydration was observed and is also confirmed by NMR and FTIR analysis. The effect of various reaction parameters such as temperature, time, substrate concentration, and catalyst loading on conversion and selectivity has been studied. The catalyst has been regenerated and recycled several times without any loss of activity and selectivity.

Efficient synthesis of 1,5-benzodiazepines catalyzed by bismuth nitrate - Bhattacharya, Asish K.; Dange, Santoshkumar S.; Polanki, Innaiah K.; Chand, Hemender R. (Indian Journal of Chemistry Section B-Organic Chemistry including Medicinal Chemistry, 2014)
An efficient method has been developed for the synthesis of biologically active 1,5-benzodiazepines in one-pot by reacting o-phenylenediamine and ketones catalyzed by bismuth nitrate pentahydrate at room temperature or under microwave irradiation.
Keywords: 1; 5-benzodiazepines; bismuth nitrate pentahydrate; o-Phenylenediamine; synthetic methods

Efficient synthesis of O-aryloxime ethers by copper fiuorapatite catalyzed cross-coupling of aryloximes with arylboronic acids - Mulla, Shafeek Abdul Rashid; Chavan, Santosh S.; Inamdar, Suleman M.; Pathari, Mohsinkhan Y.; Shaikh, Taufeekaslam M. Y. (Tetrahedron Letters, 2014)
A novel, highly efficient, and mild protocol has been developed for the synthesis of O-aryloxime ethers in good to excellent yields at ambient reaction conditions. This is the first report in which =N-O-Ar linkage was achieved with ecofriendly, recyclable, heterogeneous copper fluorapatite (CuFAP) catalyst via C-O cross coupling of aryloxime with arylboronic acid in the presence of Cs2CO3 as base and methanol as solvent. (C) 2014 Elsevier Ltd. All rights reserved.
Keywords: Arylboronic acid; Aryloxime; Copper fluorapatite; O-Aryloxime ethers

Electrochemical preparation of vertically aligned, hollow CdSe nanotubes and their p-n junction hybrids with electrodeposited Cu2O - Debgupta, Joyashish; Devarapalli, Rami Reddy; Rahman, Shakeelur; Shelke, Manjusha V.; Pillai, Vijayamohanan K. (Nanoscale, 2014)
Vertically aligned, hollow nanotubes of CdSe are grown on fluorine doped tin oxide (FTO) coated glass substrates by ZnO nanowire template-assisted electrodeposition technique, followed by selective removal of the ZnO core using NH4OH. A detailed mechanism of nucleation and anisotropic growth kinetics of nanotubes have been studied by a combination of characterization tools such as chronoamperometry, SEM and TEM. Interestingly, ``as grown'' CdSe nanotubes (CdSe NTs) on FTO coated glass plates behave as n-type semiconductors exhibiting an excellent photo-response (with a generated photocurrent density value of similar to 470 mu A cm(-2)) white in contact with p-type Cu2O (p-type semiconductor, grown separately on FTO plates) because of the formation of a n-p heterojunction (type II). The observed photoresponse is 3 times higher than that of a similar device prepared with electrodeposited CdSe films (not nanotubes) and Cu2P on FTO. This has been attributed to the hollow 1-D nature of CdSe NTs, which provides enhanced inner and outer surface areas for better absorption of light and also assists faster transport of photogenerated charge carriers.

Electronic transition dipole moment: a semi-biorthogonal approach within valence universal coupled cluster framework - Bhattacharya, Debarati; Vaval, Nayana; Pal, Sourav (International Journal of Quantum Chemistry, 2014)
Electronic dipole strengths (square of transition moments) and oscillator strengths are evaluated for various transitions, arising from the ground state to a few valence excited states. Parallel to two other methods of calculating the dipole strength within the Fock-space multireference coupled cluster framework, a new semi-biorthogonal approach is formulated and implemented in this article. This semi-biorthogonal approach can evaluate dipole strengths at a lower computational effort than the biorthogonal approach without compromising on the accuracy. This new method is compared and tested against the previously developed expectation value and biorthogonal approach for various molecular transitions. (C) 2014 Wiley Periodicals, Inc.
Keywords: electronic transition dipole; Fock-space; oscillator strength; semi-biorthogonal expectation value

Electrostatics determine vibrational frequency shifts in hydrogen bonded complexes - Dey, Arghya; Mondal, Sohidul Islam; Sen, Saumik; Ghosh, Debashree; Patwari, G. Naresh (Physical Chemistry Chemical Physics, 2014)
The red-shifts in the acetylenic C-H stretching vibration of C-H center dot center dot center dot X (X = O, N) hydrogen-bonded complexes increase with an increase in the basicity of the Lewis base. Analysis of various components of stabilization energy suggests that the observed red-shifts are correlated with the electrostatic component of the stabilization energy, while the dispersion modulates the stabilization energy.

Enantioselective heterogeneous bronsted acid catalysis - Mutyala, Anil Kumar; Patil, Nitin T. (Organic Chemistry Frontiers, 2014)
This highlight describes the synthesis and catalytic activities of heterogeneous chiral Bronsted acid catalysts. The heterogeneous catalysts are stable, easily separable from the reaction mixture and can be used multiple times without any loss of activity. As a remarkable particularity, the use of heterogeneous catalyst systems has been exemplified for designing continuous flow reactors.

Enhanced capacitance retention in a supercapacitor made of carbon from sugarcane bagasse by hydrothermal pretreatment - Wahid, Malik; Puthusseri, Dhanya; Phase, Deodatta; Ogale, Satishchandra (Energy & Fuels, 2014)
A unique morphology-controlling protocol involving hydrothermal preprocessing before pyrolysis is presented to convert cellulosic waste in the form of sugarcane bagasse into three-dimensional (3D) interconnected, conducting, and high surface area carbon nanochannels. The large buffer spaces in such a porous carbon sample yield impressive electrochemical capacitance (C-sp) of 280 F/g at a current density of 1 A/g (and 275 F/g at 5 mV/s), with 72% retention even at a very high current density of 20 A/g. In contrast, the non-hydrothermally treated sample exhibits a C-sp value of 180 F/g at 1 A/g and only 52% retention at 20 A/g. The much better performance of the hydrothermally preprocessed bagasse-derived carbon (BHAC) can be ascribed to the solvent retention inside the buffer spaces created, negating the diffusional limitations of pore inaccessibility at higher scan rates. The BHAC has a high surface area of 1260 m(2)/g with a fairly good (11 wt %) concentration of oxygen functionality. The material renders a good energy density of Wh/kg at a power density of 3.5 kW/kg and shows good cyclability of 90% after 1000 charge/discharge cycles.

Enhanced interaction of molecular oxygen with amino acid complexes of silver and gold clusters - Manzoor, Dar; Pal, Sourav (Indian Journal of Chemistry Section A-Inorganic Bio-Inorganic Physical Theoretical & Analytical Chemistry, 2014)
Density functional theory calculations have been carried out to study the effect of amino acid adsorption on the reactivity of silver and gold clusters with molecular oxygen. It is found that the amino acids glycine and alanine form stable complexes with both Ag-4 and Au-4 clusters. However, the extent of interaction is more in the case of the Au-4 cluster, as reflected from the increase in binding energy in the amino acid Au-4 complexes. Our results confirm that the adsorption of amino acids glycine and alanine enhances the reactivity of Ag-4 and Au-4 clusters towards O-2 molecule. The enhanced reactivity of O-2 molecule towards the amino acid metal cluster complexes is manifested by an increase in the O-2 binding energy and a decrease in the M-O (M = Ag, Au) bond length. Moreover, it is found that the co-adsorption of amino acids and O-2 molecule on the Ag-4 and Au-4 clusters is cooperative.
Keywords: Amino acid complexes; Density functional calculations; Gold clusters; Metal clusters; Silver clusters; Theoretical chemistry

Enhancement in the field emission behavior of graphene in N-2/O-2 high vacuum ambience - Suryawanshi, S. R.; Kolhe, Pankaj S.; Gavhane, D. S.; Patil, S. S.; Chavan, P. G.; More, Mahendra A.; Late, Dattatray J. (2014 27th International Vacuum Nanoelectronics Conference (IVNC), 2014)
Herein we report, pressure dependent field emission (FE) behaviour of a few-layer graphene emitter. Gas dependent FE properties have been investigated in ultra high vacuum (UHV), as well as in N-2 and O-2 ambience at base pressure similar to 1x10(-6) torr. Interestingly, the graphene emitter when operated in N-2/O-2 ambience exhibits lower turn-on field and higher emission current density, as compared to the UHV conditions. The emission current stability investigated at preset value of similar to 1 mu A over the period of more than 2 hrs is found better in the N2 ambience and is characterized by fewer fluctuations, in contrast to the behaviour in the O-2 ambience. The observed enhanced electron emission behavior in N-2/O-2 ambience is attributed to modulation of the work function of graphene emitter.
27th International Vacuum Nanoelectronics Conference (IVNC), Engelberg, SWITZERLAND, JUL 06-10, 2014
Keywords: graphene; Pressure Dependent Field Emission

Enhancement of CO2 uptake in iso-reticular Co based zeolitic imidazolate frameworks via metal replacement - Panda, Tamas; Gupta, Krishna M.; Jiang, Jianwen; Banerjee, Rahul (CrystEngComm, 2014)
Three Co based Zeolitic Imidazolate Frameworks (Co-ZIF-68, -69 and -81) which adopt a GME topology with high porosity have been synthesized. These Co-ZIFs show high CO2 (273 K/298 K) uptake compared to their isostructural Zn based analogues, which has been proved experimentally as well as by ab initio calculations.

Esterification of levulinic acid to ethyl levulinate over bimodal micro-mesoporous H/BEA zeolite derivatives - Patil, C. R.; Niphadkar, P. S.; Bokade, Vijay V.; Joshi, P. N. (Catalysis Communications, 2014)
A series of bimodal micro-mesoporous H/BEA zeolite derivatives were prepared by the post-synthesis modification of H/BEA zeolite by NaOH (0.05 M-1.2 M) treatment Samples were characterized by powder XRD, low temperature nitrogen adsorption/desorption, temperature programmed desorption of ammonia and ICP. The mesopore formation was found to play a crucial role in liquid phase esterification of levulinic acid with ethanol. The enhanced catalytic activity of a bimodal micro-mesoporous H/BEA zeolite derivative (H/BEA(0.10)) prepared by treatment with 0.1M NaOH can be mainly attributed to the high mesoporosity coupled with better preserved crystallinity and acidic properties. (C) 2013 Elsevier B.V. All rights reserved.
Keywords: Esterification; ethyl levulinate; H/BEA zeolite; Mesoporosity; Post-synthesis modification

Evolution of an adenine-copper cluster to a highly porous cuboidal framework: solution-phase ripening and gas-adsorption properties - Venkatesh, V.; Pachfule, Pradip; Banerjee, Rahul; Verma, Sandeep (Chemistry-A European Journal, 2014)
The synthesis and directed evolution of a tetranu-clear copper cluster, supported by 8-mercapto-N9-propyladenine ligand, to a highly porous three-dimensional cubic framework in the solid state is reported. The structure of this porous framework was unambiguously characterized by Xray crystallography. The framework contains about 62% solvent-accessible void; the presence of a free exocyclic amino group in the porous framework facilitates reversible adsorption of gas and solvent molecules. Oriented growth of framework in solution was also tracked by force and scanning electron microscopy studies, leading to identification of an intriguing ripening process, over a period of 30 days, which also revealed formation of cuboidal aggregates in solution. The elemental composition of these cuboidal aggregates was ascertained by EDAX analysis.
Keywords: cuboidal frameworks; gas adsorption; metal-organic frameworks; Ostwald ripening; solution-phase ripening

Extracellular biosynthesis of metal sulfide nanoparticles using the fungus fusarium oxysporum - Senapati, Satyajyoti; Syed, Asad; Khan, Shadab; Pasricha, Renu; Khan, Mohammad Islam; Kumar, Rajiv; Ahmad, Absar (Current Nanoscience, 2014)
The development of reliable, eco-friendly processes for the synthesis of nanomaterials is an important aspect of nanotechnology. One approach that shows immense potential is based on the biosynthesis of nanoparticles using microorganisms such as bacteria. In this report, we demonstrate the extracellular biosynthesis and complete characterization of metal sulfide (PbS, ZnS, MnS and NiS) nanoparticles using fungus, Fusarium oxysporum. We observed that the exposure of aqueous solution of 1 mM metal sulfate to fungus Fusarium oxysporum resulted in the formation of highly stable technologically important metal sulfide semiconductor nanoparticles. Fusarium oxysporum synthesizes lead sulfide and zinc sulfide nanoparticles of fractal type structure whereas manganese sulfide and nickel sulfide nanoparticles are of variable polydispersed morphology. The variable morphology may be due to the dissimilar interaction of metal sulfide nanoparticles with capping proteins secreted by the fungus in solution. The nanoparticles solution is found to be extremely stable with little evidence of aggregation even after a month of storage. The long term stability of the nanoparticles is due to the proteins secreted by fungus in the nanoparticle solution which bind to the surface of the nanoparticles and thus prevent aggregation.
Keywords: Biosynthesis; enzymes; fungi; metal sulfide; Nanoparticles

Extracellular synthesis of silver nanoparticles using living peanut seedling - Raju, D.; Paneliya, Nikita; Mehta, Urmil J. (Applied Nanoscience, 2014)
Synthesis of nanoparticles by environment friendly method is an important aspect of nanotechnology. In the present study, extracellular reduction of silver ions to silver nanoparticles was carried out using living peanut plant. The electron microscopic analysis shows that the formed nanoparticles were of different shapes and sizes. The formed nanoparticles were polydispersed. The shapes of the nanoparticles were spherical, square, triangle, hexagonal and rod. Most of the particles were spherical and 56 nm in size. EDS analysis confirmed the formed nanoparticles were of silver. The crystalline nature of nanoparticles was confirmed by diffraction. This method opens up an exciting possibility of plant-based synthesis of other inorganic nanomaterials. This study confirms the synthesis of extracellular silver nanoparticles by living plant.
Keywords: Nanoparticles; Shapes; Silver; synthesis; TEM

Facile room temperature methods for growing ultra thin films of graphene nanosheets, nanoparticulate tin oxide and preliminary assessment of graphene-tin oxide stacked layered composite structure for supercapacitor application - Patil, Sagar; Patil, Virendra; Sathaye, Shivaram; Patil, Kashinath (RSC Advances, 2014)
We report a novel, facile, single step process for growing highly uniform few layer graphene nanosheet (FLGNS) thin films over a micrometer scale, formed at the liquid-air interface. The process is further extended to form monolayer graphene nanosheets (GNS). The films are characterized by Raman spectroscopy, Atomic force microscopy (AFM) and X-ray photoelectron spectroscopy (XPS). The results indicate that very few chemical and/or physical defects are introduced during formation of films. Further, an innovative single step method to form tin oxide (SnO2) films at the liquid-air interface is presented. A special feature of the method is that entire process is completed at room temperature. The film can be suitably transferred to the desired substrates by Blodgett technique. Characterization by various techniques such as XPS, TEM and energy dispersive spectroscopy (EDS) shows that the films are made up of uniform spherical, crystalline SnO2 particles with the size in the range of 3-5 nm. Layer-by-layer (LbL) techniques can be exploited to stack graphene and SnO2 films alternately, in a desired sequence, forming a stacked composite structure. The composite structure is subjected to characterization by XPS, FE-SEM, TEM and EDS. The results show that the structure consists of a stack of predetermined thickness consisting of alternate layers of both the components. Such a structure is subjected to cyclic voltammetry (CV) studies. The results suggest LbL grown SnO2-GNS stacked composites exhibit better electrochemical performance in terms of specific capacitance and cycling ability which are primary requirements for the supercapacitor application. The coating techniques of few layer graphene nanosheets, SnO2 film and their stacked composite film are simple and inexpensive. A suitable explanation of the formation of both GNS and SnO2 films is discussed. The proposed methods extend the scope for production of high quality and defect free graphene nanosheets (GNS) and other components for forming LbL stacking of composite films.

Facile room temperature synthesis of ZnO nanoflower thin films grown at a solid-liquid interface - Jadhav, Aarti H.; Patil, Sagar H.; Sathaye, Shivaram D.; Patil, Kashinath R. (Journal of Materials Science, 2014)
Hierarchical ZnO films consisting of nanoflower particulates are successfully grown by a solid-liquid interface reaction technique at room temperature without additives like surfactants, capping agent, or complexing agent. The structural, morphological, and photocatalytic properties of these films are studied using scanning electron microscopy (SEM), energy dispersive X-ray analysis (EDX), transmission electron microscopy (TEM), X-ray photoelectron spectroscopy (XPS), X-ray diffraction (XRD), and UV-Vis spectroscopy. The nucleation, growth processes and hence the resulting morphology of the end product can be regulated by changing the concentration of LiOH and the time of reaction. SEM throws light on the chronology of the flower formation by studying the intermediate morphology. Electron microscopy results indicated that these ZnO nanostructures self-assembled to produce flower-like nanostructures. The highest photocatalytic efficiency was observed for the films prepared at the concentration of LiOH 0.5 mg/mL in ethanol at 24 h. On the basis of the results, a plausible growth mechanism for the formation of flower-like ZnO nanostructures is discussed.

Facile synthesis of gamma-ketophosphonates by an intermolecular stetter reaction onto vinylphosphonates - Patra, Atanu; Bhunia, Anup; Biju, Akkattu T. (Organic Letters, 2014)
The atom-economic and practical N-heterocyclic carbene (NHC) catalyzed Stetter reaction for the synthesis of gamma-ketophosphonates by the reaction of aromatic aldehydes with vinylphosphonates is reported. The NHC derived from N-mesitylimidazolium salt (IMes) was an effective catalyst for this transformation, and the products were formed in moderate to good yields.

Factors influence on growth, don and niv production by two species of fusarium isolated from finger millets [eleusine coracana l.] - Vankudoth, Koteswara Rao; Penugonda, Shilpa; Sivadevuni, Girisham; Reddy, S. M. (International Journal of Pharmacy and Pharmaceutical Sciences, 2014)
ABSTRACT Objective: The present investigations (In vitro) on an influence of different synthetic and food based [flour] media, pH, temperature and microbial nutrients on growth, Deoxynivalenol [DON] and Nivalenol [NIV] production by Fusarium aethiopicum and F. culmorum was carried out. Methods: Fusarium species associated with the finger millets were isolated and identified phenotypically and further confirmed by molecular methods by Polymerase Chain Reaction [PCR]. Monosporic seven day old F. aethiopicum and F. culmorum were grown in CYA broth and incubated at 27±2°C on rotary shaker for 21 days at 120 rpm. At the end of 21 day incubation period, cultures were harvested for determination of fungal biomass. The resultant culture filtrates were extracted twice with ethyl acetate and concentrated to get and final concentration of 1 ml in methanol and employed for RP-HPLC analysis for detection of DON and NIV production. Results: Finger millets flour medium induced the highest amount of mycelial growth, DON and NIV production by F. aethiopicum. However, F. culmorum achieved highest amount of hyphal growth, DON and NIV production under the influence of yeast extract sucrose [YES] medium. Maize flour medium, rice flour medium and sorghum flour medium was next preffered substrates. Optimum pH of 5.5-6.5 and temperature of 20-35°C for growth, DON and NIV production was observed. Both the species of Fusarium failed to grow and produce toxins at pH 2.5-3.5 and temperature of 40°C. Yeast extract was most favorable for maximum DON and NIV production, which increased with an increase in its concentration. On the other hand, malt extract and beef extract induced good growth and mycotoxin production at comparatively higher concentration in both the species of Fusarium under study. Conclusion: Comparatively food based media were the better substrates than synthetic media for both growth and DOIN and NIV production by two species of Fusarium under investigation. A positive correlation coefficient [r] on growth [0.458], DON [0.744] and NIV [0.882] was recorded among the media and both the species of Fusarium. Keywords: Finger millets, F. aethiopicum, F. culmorum, Synthetic media, pH, Temperature, Microbial nutrients, DON, NIV, HPLC

Fe-TAML encapsulated inside mesoporous silica nanoparticles as peroxidase mimic: femtomolar protein detection - Kumari, Sushma; Dhar, Basab B.; Panda, Chakadola; Meena, Abhishek; Sen Gupta, Sayam (ACS Applied Materials & Interfaces, 2014)
Peroxidase, such as horseradish peroxidase (HRP), conjugated to antibodies are routinely used for the detection of proteins via an ELISA type assay in which a critical step is the catalytic signal amplification by the enzyme to generate a detectable signal. Synthesis of functional mimics of peroxidase enzyme that display catalytic activity which far exceeds the native enzyme is extremely important for the precise and accurate determination of very low quantities of proteins (fM and lower) that is necessary for early clinical diagnosis. Despite great advancements, analyzing proteins of very low abundance colorimetrically, a method that is most sought after since it requires no equipment for the analysis, still faces great challenges. Most reported HRP mimics that show catalytic activity greater than native enzyme (similar to 40-fold) are based on metal/metal-oxide nanoparticles such as Fe3O4. In this paper, we describe a second generation hybrid material developed by us in which approximately 25 000 alkyne tagged biuret modified Fetetraamido macrocyclic ligand (Fe-TAML), a very powerful small molecule synthetic HRP mimic, was covalently attached inside a 40 nm mesoporous silica nanopartide (MSN). Biuret-modified Fe-TAMLs represent one of the best small molecule functional mimics of the enzyme HRP with reaction rates in water close to the native enzyme and operational stability (pH, ionic strength) far exceeding the natural enzyme. The catalytic activity of this hybrid material is around 1000-fold higher than that of natural HRP and 100-fold higher than that of most metal/metal oxide nanoparticle based HRP mimics reported to date. We also show that using antibody conjugates of this hybrid material it is possible to detect and, most importantly, quantify femtomolar quantities of proteins colorimetrically in an ELISA type assay. This represents at least 10-fold higher sensitivity than other colorimetric protein assays that have been reported using metal/metal oxide nanoparticles as HRP mimic. Using a human IgG expressing cell line, we were able to demonstrate that the protein of interest human IgG could be detected from a mixture of interfering proteins in our assay.
Keywords: colorimetrically; immuno assay; MSN; peroxidase mimic; signal amplification

Flexible dicarboxylate based pillar-layer metal organic frameworks: differences in structure and porosity by tuning the pyridyl based N, N ` linkers - Dey, Rajdip; Bhattacharya, Biswajit; Pachfule, Pradip; Banerjee, Rahul; Ghoshal, Debajyoti (CrystEngComm, 2014)
{Dicarboxylate supported metal organic hybrids of Co(II), Zn(II) and Cd(II) have been synthesized using two different pyridyl based N, N' linkers having Schiff base functionalized site. The use of flexible dicarboxylate glutarate in designing such frameworks has created a marked diversity in topology. The different N, N' donor linkers also played an active part in the channel modification in the synthesized MOFs. The structural and topological diversity has been analyzed from the single crystal X-ray structure. Five compounds, {[Co(azpy)(glut)]center dot(CH3OH)}(n) (1), {[Co(meazpy)(glut)(H2O)(2)]center dot (H2O)(3)

Formation of a pseudo-beta-hairpin motif utilizing the Ant-Pro reverse turn: consequences of stereochemical reordering - Nair, Roshna V.; Kotmale, Amol S.; Dhokale, Snehal A.; Gawade, Rupesh L.; Puranik, Vedavati G.; Rajamohanan, Pattuparambil R.; Sanjayan, Gangadhar J. (Organic & Biomolecular Chemistry, 2014)
Herein, we report a special case of pseudo-beta-hairpin formation by tetrapetide sequences featuring a two-membered Ant Pro dipeptide motif (Ant = anthranilic acid and Pro = proline) at the loop region. These folded structures uniquely feature the presence of C9- and C17-H-bonding patterns at reverse turn and interstrand regions, respectively. Their hairpin nucleation and folding propensities have been expounded using solution and solid state studies of distinct stereochemically altered sequences.

Formation of a room temperature stable Fe-V(O) complex: reactivity toward unactivated C-H bonds - Ghosh, Munmun; Singh, Kundan K.; Panda, Chakadola; Weitz, Andrew; Hendrich, Michael P.; Collins, Terrence J.; Dhar, Basab B.; Sen Gupta, Sayam (Journal of American Chemical Society, 2014)
An Fe-V(O) complex has been synthesized from equimolar solutions of (Et4N)(2)[Fe-III(Cl)(biuretamide)] and mCPBA in CH3CN at room temperature. The Fe-V(O) complex has been characterized by UV-vis, EPR, Mossbauer, and HRMS and shown to be capable of oxidizing a series of alkanes having C-H bond dissociation energies ranging from 99.3 kcal mol(-1) (cyclohexane) to 84.5 kcal mori (cumene). Linearity in the Bell-Evans-Polayni graph and the finding of a large kinetic isotope effect suggest that hydrogen abstraction is engaged the rate-determining step.

From micron to nano-curcumin by sophorolipid co-processing: highly enhanced bioavailability, fluorescence, and anti-cancer efficacy - Singh, Pradeep Kumar; Wani, Kirtee; Kaul-Ghanekar, Ruchika; Prabhune, Asmita; Ogale, Satishchandra (RSC Advances, 2014)
Co-sonication of curcumin and acidic sophorolipid in aqueous solution is shown to lead to a dramatic enhancement of curcumin bioavailability through size reduction and encapsulation. The interaction between the two is studied and discussed based on optical absorption, photoluminescence, dynamic light scattering (DLS), zeta potential, FE-SEM, TEM, Infrared spectroscopy and X-ray diffraction measurements. The cytotoxicity effects of curcumin on breast cancer cell lines, MCF-7 and MDA-MB-231, are shown to be significantly enhanced by the formation of its complex with sophorolipid. The relative cytotoxicity of curcumin with its SL(A) complex is more due to the presence of the glucose moiety. The results further suggest that sophorolipid based formulations, which solubilize and nano-encapsulate curcumin after lipid digestion, show great potential for curcumin cell entry.

From waste paper basket to solid state and Li-HEC ultracapacitor electrodes: a value added journey for shredded office paper - Puthusseri, Dhanya; Aravindan, Vanchiappan; Anothumakkool, Bihag; Kurungot, Sreekumar; Madhavi, Srinivasan; Ogale, Satishchandra (Small, 2014)
Hydrothermal processing followed by controlled pyrolysis of used white office paper (a globally collectable shredded paper waste) are performed to obtain high surface area carbon with hierarchical pore size distribution. The BET specific surface area of such carbon is 2341 m 2 g(-1). The interconnected macroporous structure along with the concurrent presence of mesopores and micropores makes the material ideal for ultracapacitor application. Such waste paper derived carbon (WPC) shows remarkable performance in all solid-state supercapacitor fabricated with ionic liquid-polymer gel electrolyte. At room temperature, the material exhibits a power density of 19 000 W kg(-1) with an energy capability of 31 Wh kg(-1). The Li-ion electrochemical capacitor constructed using WPC as cathode also shows an excellent energy storage capacity of 61 Wh kg(-1)

Functionally engineered egg albumen gel for quasi-solid dye sensitized solar cells - Kelkar, Sarika A.; Pandey, Komal; Agarkar, Shruti A.; Saikhedkar, Nidhi; Tathavadekar, Mukta; Agrawal, Ishita; Gundloori, Rathna V. N.; Ogale, Satishchandra (ACS Sustainable Chemistry & Engineering, 2014)
In this report, we demonstrated an interesting application of a bioderived material for the dye sensitized solar cells (DSSCs). Egg white, the clear liquid in a hen's egg, which possesses a remarkable gelling/cross-linking ability, was applied in the form of a gel electrolyte in a DSSC architecture to enhance its durability. A hybrid gel composed of poly(acrylic acid), polyaniline and egg albumen was synthesized, and the cell efficiency, stability and durability of the corresponding DSSC device were studied in detail. The dye sensitized solar cell with the egg albumen based electrolyte demonstrated a conversion energy efficiency of 4.6%. Further, a chemically modified egg albumen with ethylenediaminetetraacetic dianhydride showed improved cross-linking, microstructural and conductivity properties of the gel, and yielded a remarkable 5.75% conversion efficiency. Electrochemical impedance spectroscopy data showed favorable characteristics for charge transport through the modified gel and supported the efficiency observations very well.
Keywords: dye sensitized solar cells; Egg albumen; gel electrolyte

Fungi mediated production and practical purification of (R)-(-)-3-quinuclidinol - Kolet, Swati P.; Jadhav, Dipesh D.; Priyadarshini, Balaraman; Swarge, Bhagyashree N.; Thulasiram, Hirekodathakallu V. (Tetrahedron Letters, 2014)
A fungal system belonging to Mucoraceae family (Mucor piriformis) was explored for the asymmetric reduction of a prochiral ketone, 3-quinuclidinone (I) in an efficient manner to produce an important pharmaceutical precursor (R)-(-)-3-quinuclidinol (II) with similar to 96% enantiomeric excess. The efficiency of the process was improved by developing a cation exchange resin (Amberlite IR-120) which assisted the purification of water soluble metabolite II from fermentation media. (C) 2014 Elsevier Ltd. All rights reserved.
Keywords: (R)-(-)-3-Quinuclidinol; Amberlite IR-120; Biotransformation; Ion exchange resin; Mucor pinformis

Glycerol etherification using n-butanol to produce oxygenated additives for biodiesel fuel over H-beta zeolite catalysts - Nandiwale, Kakasaheb Y.; Patil, Shivraj E.; Bokade, Vijay V. (Energy Technology, 2014)
The catalytic etherification of glycerol has been systematically studied in batch process by using n-butanol to produce oxygenated additives for biodiesel fuels over various solid-acid catalysts, such as H-beta zeolite, ZSM-5, K10, etc.. The present work includes a detailed study of the optimization of the etherification process parameters, such as catalyst loading (7-20 wt% of glycerol), molar ratio of glycerol/n-butanol (1: 6 to 1: 15), speed of agitation (100-400 rpm), reaction temperature (413-453 K), and reaction time (0.5-4 h) in view of maximizing the glycerol conversion and selectivity towards mono-butyl-glycerol ether (ME). The catalyst reusability was studied using the optimized process parameters. Amongst the studied catalysts, the H-beta zeolite was found to be the most promising for the etherification of glycerol with glycerol conversion of 55% and a 98% selectivity towards ME formation. The H-beta zeolite was found to be an active and stable catalyst for up to 4 cycles. The use of n-butanol as alkylating agent is presented for first time, to the authors knowledge. The reaction was performed at milder operating conditions (0.5 MPa) than previously reported (2 MPa). A kinetic model was developed for the etherification reaction and the data obtained at optimized process parameters was used to calculate the kinetic parameters. The reaction rate constants at different reaction temperatures, activation energies, and pre-exponential factors were obtained for the etherification reaction with an accuracy of R-2 > 0.989.
Keywords: biofuels; catalysis; etherification; fuel additives; zeolites

Ground state of naphthyl cation: singlet or triplet? - Dutta, Achintya Kumar; Manohar, Prashant Uday; Vaval, Nayana; Pal, Sourav (Journal of Chemical Physics, 2014)
We present a benchmark theoretical investigation on the electronic structure and singlet- triplet(ST) gap of 1- and 2-naphthyl cations using the CCSD(T) method. Our calculations reveal that the ground states of both the naphthyl cations are singlet, contrary to the results obtained by DFT/B3LYP calculations reported in previous theoretical studies. However, the triplet states obtained in the two structural isomers of naphthyl cation are completely different. The triplet state in 1-naphthyl cation is (pi,sigma) type, whereas in 2-naphthyl cation it is (pi,sigma) type, The S-T gaps in naphthyl cations and the relative stability ordering of the singlet and the triplet states are highly sensitive to the basis set quality as well as level of correlation, and demand for inclusion of perturbative triples in the coupled-cluster ansatz. (c) 2014 AIP Publishing LLC.

High charge carrier mobility in two dimensional indium (iii) isophthalic acid based frameworks - Panda, Tamas; Banerjee, Rahul (Proceedings of the National Academy of Sciences India Section A-Physical Sciences, 2014)
The effect of dimensionality (1D to 2D) on charge carrier mobility have been studied thoroughly on three In(III)-isophthalate based MOFs [In-IA-1D, In-IA-2D-1 and -2]. In-IA-1D possess 1D nanotubular architecture with [(CH3)(2)NH2](+). In-IA-2D-1 have 2D layers containing only [(CH3)(2)NH2](+) cations. Whereas, In-IA-2D-2 have [(CH3)(2)NH2](+) cations as well as solvent DMF molecule inside the crystal structure. Due to presence of the pi-pi stacking arrangement among the phenyl rings of IA moieties facilitates the high charge carrier mobility (4.6 x 10(-3) cm(2) V-1 s(-1) at V-G = -40 V) in In-IA-2D-2. However, In-IA-1D and In-IA-2D-1 does not show any charge carrier mobility due to absence of pi-pi stacking arrangement.
Keywords: Charge carrier mobility; Coordination chemistry; metal organic framework; pi-pi stacking

Highly efficient one-pot multi-component synthesis of alpha-aminophosphonates and bis-alpha-aminophosphonates catalyzed by heterogeneous reusable silica supported dodecatungstophosphoric acid (DTP/SiO2) at ambient temperature and their antitubercular eval - Mulla, Shafeek Abdul Rashid; Pathan, Mohsinkhan Y.; Chavan, Santosh S.; Gample, Suvarna P.; Sarkar, Dhiman (RSC Advances, 2014)
A highly efficient one-pot multi-component reaction (MCR) protocol over DTP/SiO2 has been developed for the synthesis of alpha-aminophosphonate derivatives (4a-x) in excellent yields. The alpha-aminophosphonate derivatives were for the first time evaluated for their antitubercular activity against the M. tuberculosis H37Ra (MTB) strain. An evaluation of the data on the cytotoxicity and antimicrobial activity shows that 4n and 4v are promising antitubercular agents.